Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04414 ATGGAGAAGAAATCACTTGCTGCCTTGTCCTTCCTCTTCCTCGTTCTCTTTGTTGCACAAGAAATTGTGGTGACTGAGGCACAATCCAAATGTGAGCATTTGGCTGATACATATAGAGGACCATGCTTCACTGATGCTAGCTGTGATGATCATTGCAAGAATAAAGAGCACTTTGTTAGTGGCACTTGCTATAACGTTCGTTGTTGGTGCTTGCATCAAAACTGTTAA 228 0.4211 MEKKSLAALSFLFLVLFVAQEIVVTEAQSKCEHLADTYRGPCFTDASCDDHCKNKEHFVSGTCYNVRCWCLHQNC 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04414 75 ProSitePatterns Gamma-thionins family signature. 29 52 IPR008176 GO:0006952
Tsu02g04414 75 CDD Knot1 40 70 IPR003614 GO:0006952
Tsu02g04414 75 PANTHER DEFENSIN 1 75 - -
Tsu02g04414 75 SUPERFAMILY Scorpion toxin-like 30 72 IPR036574 -
Tsu02g04414 75 PANTHER DEFENSIN-LIKE PROTEIN 1 1 75 - -
Tsu02g04414 75 SMART gth_4 30 74 IPR003614 GO:0006952
Tsu02g04414 75 Pfam Gamma-thionin family 31 72 - -
Tsu02g04414 75 Gene3D - 29 75 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04414 Tsu-Chr2 52933236 52934489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04414 7 71 Plant Defensins Gene Families AT1G61070 35.385 5.40e-08 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04414 - K06252 gmx:100779239 106.301