Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04407 ATGAATATTGCCGATGTGTTTCACGGACGCGTGATGGGTGGTGGAACATCAGACATGATGATGCGAGCAAAACATGCGATTGCTTTGGGTCTGATACGGGCTGGTGCTTTGCAAAATGCCACAGCGGCTGAGCTTGTTCATATTCGGCTTCTGTTAATTGGAAAATCCGACTCAAGGGTGATTCCAATGTGTCCTATTAATTATCATTCAAGGTGCATAGGTGTGATGAAGATGCATTTAACAGAATTGACAAATCAAATGGCAAGAGCTCTAGTTAGGTGCCAAACAAAGACGGTTTTAGAGGATGTTGGTGCTGCTGTTattgacaaaaatatgattCCTATTTATGCTCATGTTAGAGGAGCTGATCTTGCTACTCAAAATTTTCTACTCCAAGACCCTTGTGATAGTGATAGTGATAATTGGGTTAAATTTGATGCAGCAAGGATTTTTCTATCTTTTGACAACTCTGTAGCTTTTTGTGTACCAGTGCATCCTCTTTCAAATGACAATACTCTAATTCAATGTATGTATAACCAGTTAAGTGCAAGACCAATTAGAGACTGTTGTTTTGCAACTGTTGCTCATAGAAACAATTCTGATGTTGATAAAAACGAATCATCACAATTGAAAATTGTGGGCATTTATGCACTGGAAGTACAAGAAATTGTTCTGAGAGGTACAGATGCTTATGGTTTGAAAAAACTCTCTGCAATACCACCAAGGAAAATTGTTCTATTTTGCAATGGCTTGGTTGCTATTCAACAAACTCATTTTGGAATGGAGGAGCCATCAACATTTTGTTCAAAAATTTTACAGGAACTAAAGAAAATTGGACTAGTGGTGGAAGGGGAAGGATGGTGGGATGAGAAGAAAAATGCTTTATATGTAGTTGCTTGTGATTTCATTGGCATCATGAAATCAACTTGGGATGGAACTCGTATTGGCGATTGCTCGGTAAGATTGAGATTGAGTTTCCCTTCGGTTTGGTCAATCGAAAATACTAATAGCATAGTTGGACAAATTTGGAGCAACAAGACTGCTAATGATCCAAACTACTTCAAGAtgataaaatttagaaatttcgACAATGCTAAGGTCGGATATCGAGCGTCCAAGTACGAGTATAGCAAGCTTGAGAGAGTTAAGAAATCATGTCCAACACACACAAGGAATTCGGTGTTCAATTTGTCTTCTTATAGAGTGAAGATTTCTGCAGAAGGAATTTATGATGCTAGAACAGGAACTTTGTGTATGATTGGTTGCCGCGATCTTAACTCAAAAGCTGGAACACCATTAGCTGGATCTGTCGACTGTGAGATTCTATTGAAGTTTCAATTTCCATCATTGGATACAACAAATGGAAGCCACATTAAAGGAAGTATCGAAAGCACGCGCAAAAAATCGGATCCTCTTTACTTCAAAAGTTTAGAGGTATCTTCGTATGCAATTTACTCGGAAACAGCAATAAAAGCTATTTGGAGAATGGATATGGAGATTATCATGGTTCTGATATCTACCACTTTATCATGTGTTTTCATTGGATTACAACTATACCATGAGAAGAGAAATTCTTGCTCATAA 1584 0.3744 MNIADVFHGRVMGGGTSDMMMRAKHAIALGLIRAGALQNATAAELVHIRLLLIGKSDSRVIPMCPINYHSRCIGVMKMHLTELTNQMARALVRCQTKTVLEDVGAAVIDKNMIPIYAHVRGADLATQNFLLQDPCDSDSDNWVKFDAARIFLSFDNSVAFCVPVHPLSNDNTLIQCMYNQLSARPIRDCCFATVAHRNNSDVDKNESSQLKIVGIYALEVQEIVLRGTDAYGLKKLSAIPPRKIVLFCNGLVAIQQTHFGMEEPSTFCSKILQELKKIGLVVEGEGWWDEKKNALYVVACDFIGIMKSTWDGTRIGDCSVRLRLSFPSVWSIENTNSIVGQIWSNKTANDPNYFKMIKFRNFDNAKVGYRASKYEYSKLERVKKSCPTHTRNSVFNLSSYRVKISAEGIYDARTGTLCMIGCRDLNSKAGTPLAGSVDCEILLKFQFPSLDTTNGSHIKGSIESTRKKSDPLYFKSLEVSSYAIYSETAIKAIWRMDMEIIMVLISTTLSCVFIGLQLYHEKRNSCS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04407 527 Pfam Protein of unknown function (DUF2921) 399 525 IPR021319 -
Tsu02g04407 527 Pfam Protein of unknown function (DUF2921) 280 392 IPR021319 -
Tsu02g04407 527 PANTHER DUF2921 FAMILY PROTEIN 391 524 - -
Tsu02g04407 527 PANTHER DUF2921 FAMILY PROTEIN 273 390 - -
Tsu02g04407 527 PANTHER FAMILY PROTEIN, PUTATIVE (DUF2921)-RELATED 391 524 IPR021319 -
Tsu02g04407 527 PANTHER FAMILY PROTEIN, PUTATIVE (DUF2921)-RELATED 273 390 IPR021319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04407 Tsu-Chr2 52853609 52864565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04407 217 275 Eukaryotic Initiation Factors Gene Family AT1G72730 50.847 1.36e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04407 - - gmx:102660202 186.422