Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04390 ATGCAGCAACTTTTACGTGGCCTTGATCACTGCCACAGCCGTGGTGTACTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGATAATAATGGAGTATTGAAAATTGCGGATTTTGGTTTGGCCAGCTTTTTTGATCCTAATCAAAATCAGCCGCTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCACCTGAACTTTTACTTGGAGCTACTTACTATGGCACTGCTGTAGATTTATGGAGTACAGGGTGCATACTTGCTGAGTTGTATGCCGGCAAGCCTATTATGCCTGGTAGAACTGAGGTGGAGCAATTACataaaatttttaaactttGTGGTTCGCCTTCAGAGGATTATTGGAGAAAATCAAAATTGCCTCATGCAACGATATTTAAGCCTCAACAGCCTTATAGGCGTTGCGTTGCTGAAACATTCAAAGACTTTCCTGCACCTGCAATAGAACTGATAGAGACACTTTTGTCCATAGACCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGATAAGTGAGTTCTTCTCAACAAAGCCTTTACCTTGTGATCCTTCAAGCTTGCCGAAGTATCCTCCTAGCAAAGAATTTGATGCTAAAGTACGGGATGAAGAAGCTAGAAGACAAGGAGCAACAGGAAGCAAGGGCCAGAGACATGATCCCGAGAGAAGAGGAGTAAGAGAATCTCGAGCTGTTCCTGCACCTGATGCCAATGCTGAACTGGTTGTGTCAATGCAGAAGAGACAAGGTCAGAACTATTCTCAAAGCAGGAGTGAGAAGTTTAATCCTCATCCTGAAGAAGTTGCTTCTGGTTTTCCCATTGAACCCCCTAGACCATCACAAGCCGCAGAAGCAACTGTGGATCCCCAAGCAAATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCTGCATGGGCGAAAGCTGGGAAGAACCAAGACGATGCTCCAAAGGTTTCAATGGGTGGCGACTTGTCTAATATCTCTGGCTTAGTTGCAGCCAGGAGGAGTATGCTGTCTGACGACCGCAGAGAAAGTGCTGGATCATCACAAGTGGAGGCTCCAAAACTAATTACTAGGTTCCCAGGTTCCTTCAAGGAAGCTTCTGAATCATTGatgaaacaaaatcaaaatcagaagCATCATGTACATGCTTCTCAAAAGGAAGAAGCGAAAGACAGTAACAAAGACCCAAATCTTGCTGGTTATGGATCAAAGGGttataaaattcattattcCGGTCCATTACTTGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCATGACCGCCAAATTCAAGAAGCGGTCAGAAGAGCACGTTTAGACAAGGCAAAAATGCGAAGACTCCAAGCTGACCAATTAAGCAATTCATTATTTGTTTCTGGTCGTTGA 1419 0.4334 MQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPNQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIETLLSIDPADRGTSASALISEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGATGSKGQRHDPERRGVRESRAVPAPDANAELVVSMQKRQGQNYSQSRSEKFNPHPEEVASGFPIEPPRPSQAAEATVDPQANQHKRASHSGPLTHRAAWAKAGKNQDDAPKVSMGGDLSNISGLVAARRSMLSDDRRESAGSSQVEAPKLITRFPGSFKEASESLMKQNQNQKHHVHASQKEEAKDSNKDPNLAGYGSKGYKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQADQLSNSLFVSGR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04390 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Tsu02g04390 472 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04390 472 MobiDBLite consensus disorder prediction 187 332 - -
Tsu02g04390 472 Pfam Protein kinase domain 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04390 472 SUPERFAMILY Protein kinase-like (PK-like) 1 188 IPR011009 -
Tsu02g04390 472 MobiDBLite consensus disorder prediction 389 403 - -
Tsu02g04390 472 Gene3D Transferase(Phosphotransferase) domain 1 1 219 - -
Tsu02g04390 472 SMART serkin_6 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04390 472 MobiDBLite consensus disorder prediction 199 234 - -
Tsu02g04390 472 PANTHER CYCLIN-DEPENDENT KINASE 1 456 - -
Tsu02g04390 472 MobiDBLite consensus disorder prediction 375 411 - -
Tsu02g04390 472 MobiDBLite consensus disorder prediction 248 263 - -
Tsu02g04390 472 PANTHER CELL DIVISION PROTEIN KINASE 1 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04390 Tsu-Chr2 52608294 52614669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04390 1 237 Core Cell Cycle Gene Families AT5G64960 52.227 1.53e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu02g04390 Pkinase 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04390 - - gmx:100776578 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04390 02 52608294 52614669 Tsu02g04390 02 52608294 52614669 ECH