Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04388 ATGATAAAGATGGAGGATAATTCTGAGAGTTCTAGGGGTTTGAATAGTTCTGGAGTCTCAGATAGGAATCAAAGGGAAAACCGTTTTTCGGGCGAGGGATCGCAAGATTCTAGGTTTAGAAAGGAAAGAGATTGGATTCACGGTGTACAAGgtgatcaaaacaaaaacctaGGTGGATTTTGTGAGGATGAAGTTGAGAATGAGAATGATCCTTTCTTTGGTTCGGTAGAATGGGGTGATATTAGTTTGAGGCAATGGTTGGATAAATCGGATCGGTCTGTAGATTTCTTTGAATGCTTGCATATATTTAGGCAAATAGTAGAGATCGTTAATGCGGCACATTGTCAAGGTGTTGTAGTTCATAATGTGAGGCCTTCTTGCTTTGTTATGTCGTCTTTCAACCATATCTCGTTTATTGAATCGGCTTCTTGTTCGGATACCGGTTCAGATTCTTTAGGAGATGGAATGAACAACGATCAAGGTGTTGAGGTTAAAACTCCGACATCTCACTGTCCTCATGATATGCATCATCAGCAGAGTTTAGGAAGTGAAGATTTTATGCCTGCTGCCAAGATTTCGACAGATGCTCGGTCTGATTCTAGTTGTATGCTGTCAAGTGCTGTCTATGCAGCTCGTGCGTCGTTAATAGAAGAAACggaagaaaacaaaatgaaagatAGGAGGAAGGATGAAGAAGTGGAAGGAAAGAAGCAATCGTTTCCGATGAAACAGATACTTCTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAAGTTGCTGGTACTCCTAGTTCATGTGCTTCGGATGTTTACAGATTGGGGATTCTTCTTTTCGAGCTATTCTGTCCACTAAGCTCGAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGACATAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACATCCTGACCCTAGCAGTCGTCCAACACTAGGCGAGTTGTTGCAGAGTGATTTCCTTAATGAACAGCGTGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTTAGACAAAAGATAGAAGATCAGGAGTTGTTACTCGAATTCCTTTCGTTACTTAAACAAAGAAAACAGGACGTTGCTGAAAGGTTGCAACACACTATCTCTTTTCTGTGTTCAGATATCGAAGAAGTGACCAAGAAGCAAACTAGATTTAAAGAGATTTCCGGTGTTGAACTAGGGAGTGATGATCGTTTGGCATCAACTTTTCCGTCCACGACAGTTGTTGATGGCGAGGATTCCGCTTGTTTAGGAACTAGAAAACGAGTCAGACAAGGGATGCATATTGATGATTGTGATGATAACATGGAGAATGATCAGAAAAATCAAGGAAGTTTTCTTTCAAAAAGTTCACGGCTAATGAAAAACTTCAAGAAACTTGAGTCAGCATACTTTTTAACACGATGCAAACCAACCTATTCCTCAGGGAGATCGTCAATTAGACATTCACCTATAGCACCAAATGATGGGAGAGGGTCTGTCGTCTTGACCGAAAGAAGTTGCATCAATAACTTGGCGTTGAAAGAGCAAGGAAGAGACGGCGCAAGTGCTTGGATAAATCCTTTTCTCGAGGGCTTATGCAAGTACTTATCTTTCAGTAAGCTCAAGGTAAAAGCTGATTTGAAGCAAGGAGATCTTTTGCATTCTTCAAACCTAGTATGCTCGCTAAGTTTCGATCGTGATGGAGAATTGTTCGCTACCGCCGGTGtgaataagaaaatcaaaatattcgaATGTGATACGATCATAAACGAGGATCGTGATATCCACTATCCGGTAGTGGAGATGGCTTGCAGGTCAAAGTTGAGCAGTTTATGTTGGAATACATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTTACAAGAAGTCAAGTACTATCTGAAATGAGGGAGCACGAGCGGCGAGTGTGGTCCATTGATTTCTCATCAGCAGATCCGACAATGTTGGCGAGTGGAAGCGACGACGGTTCCGTTAAGCTATGGAGTATCAATCAGGCAAAATTCCATTTTTGCACTTGGTGGATGTCAAGCTTTGAAAACTAA 2130 0.4028 MIKMEDNSESSRGLNSSGVSDRNQRENRFSGEGSQDSRFRKERDWIHGVQGDQNKNLGGFCEDEVENENDPFFGSVEWGDISLRQWLDKSDRSVDFFECLHIFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGDGMNNDQGVEVKTPTSHCPHDMHHQQSLGSEDFMPAAKISTDARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGTPSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSDFLNEQRDDMEEREAAIELRQKIEDQELLLEFLSLLKQRKQDVAERLQHTISFLCSDIEEVTKKQTRFKEISGVELGSDDRLASTFPSTTVVDGEDSACLGTRKRVRQGMHIDDCDDNMENDQKNQGSFLSKSSRLMKNFKKLESAYFLTRCKPTYSSGRSSIRHSPIAPNDGRGSVVLTERSCINNLALKEQGRDGASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGELFATAGVNKKIKIFECDTIINEDRDIHYPVVEMACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQAKFHFCTWWMSSFEN 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04388 709 MobiDBLite consensus disorder prediction 8 24 - -
Tsu02g04388 709 PANTHER PROTEIN SPA1-RELATED 2 8 695 IPR044630 GO:0009640
Tsu02g04388 709 PANTHER PROTEIN SPA1-RELATED 3 8 695 - -
Tsu02g04388 709 MobiDBLite consensus disorder prediction 1 42 - -
Tsu02g04388 709 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 693 IPR001680 GO:0005515
Tsu02g04388 709 SUPERFAMILY WD40 repeat-like 570 694 IPR036322 GO:0005515
Tsu02g04388 709 Pfam WD domain, G-beta repeat 568 597 IPR001680 GO:0005515
Tsu02g04388 709 Pfam WD domain, G-beta repeat 654 691 IPR001680 GO:0005515
Tsu02g04388 709 MobiDBLite consensus disorder prediction 25 42 - -
Tsu02g04388 709 Gene3D - 544 705 IPR015943 GO:0005515
Tsu02g04388 709 Gene3D Transferase(Phosphotransferase) domain 1 80 353 - -
Tsu02g04388 709 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Tsu02g04388 709 SUPERFAMILY Protein kinase-like (PK-like) 68 343 IPR011009 -
Tsu02g04388 709 SMART serkin_6 1 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04388 709 ProSiteProfiles Protein kinase domain profile. 1 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04388 709 SMART WD40_4 612 648 IPR001680 GO:0005515
Tsu02g04388 709 SMART WD40_4 563 598 IPR001680 GO:0005515
Tsu02g04388 709 SMART WD40_4 651 691 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04388 Tsu-Chr2 52586673 52591883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04388 568 692 Miscellaneous Gene Families AT5G08390 30.400 2.08e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Tsu02g04388 WD40 7.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04388 - - gmx:100811457 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04388 02 52586673 52591883 Tsu02g04388 02 52586673 52591883 ECH