Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04376 ATGCTTGTTCAATTAGCATTAAAACAAGCTCTTATCATGCAAAAAGAAGCACAAGAAAATTCTCATCAAAATTCATCggtgcataaaatggttcaTGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTCAACCGTACACTTGAAGGATTAAACAATGCAAACAAAACATGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTTACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGATTTCAATTTCATTGTTCAAAATAATGTCATTGAGATGATAAGGAACATCTTAGCCATCAATATGTATTTCATGAAACACAACAAAGAAACAAAAGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGCATGAAAAGAAGCTTTTACAATCTAACTCTTCAATAAAGTTCAATCTTGTGGTGGCAAAAGATGGTTCTGGACATTTTAAGACGGTTCAAGCTGCTCTAGATGCTGCTgctaaaagaaaatataagacAAGATTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAAAATATTGAGGTTGCAGTGCATAATGATAATATTATGTTGGTTGGTGATGGAATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGTTCTGCTACAGCAGGCATTGACGGACTTCACTTCATTGCACGTGACATCACCTTCCAAAACACTGCTGGTCCACACAAGGGTCAAGCTGTGGCGCTTCGATCAGCCTCTGATCTCTCAGTATTCTACCGTTGTGCCATATCAGGTTATCAAGACACTCTAATGACTCATGCACAACGTCAATTTTACCGACAATGTTACATCTATGGCACCGTAGACTTCATCTTTGGCAACGCTGCAGTGGTATTccaaaattgtaatatttttgcAAGAAAGCCTTTAGATGGTCAAGCTAACATGATCACCGCCCAAGGTCGAGGTGACCCATTCCAAAACACCGGAATTTCATTCCACAATTGTCAAATTAGGGCTGCATCCGATTTAAAGCCCGTCGTCGACAAGTACAATACCTTCTTGGGCCGACCTTGGCAACAATACTCGAGAGTTATGGTAATGAAAACTTTTATGGACACTTTAGTGAGCCCATTGGGTTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGACACATTATATTATGGTGAGTATGAAAATTATGGGCCTGGCTCATCAACAAAAGAGAGAGTGAAATGGCCTGGTTATCATGTGATAACAAACCCAAATGAAGCCTCAAAGTTTACTGTTACTGGACTTCTTGCTGGCCCAACATGGTTGGCTACAGCTACTGTGCCATTTACATCTGGTCTTTGA 1380 0.3754 MLVQLALKQALIMQKEAQENSHQNSSVHKMVHGDCLKLFENTIFHLNRTLEGLNNANKTCSPHDAQTWLTTSLTNIETCKSGALELNAQDFNFIVQNNVIEMIRNILAINMYFMKHNKETKEGLFPSWFSRHEKKLLQSNSSIKFNLVVAKDGSGHFKTVQAALDAAAKRKYKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIRAASDLKPVVDKYNTFLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTKERVKWPGYHVITNPNEASKFTVTGLLAGPTWLATATVPFTSGL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04376 459 Pfam Pectinesterase 146 444 IPR000070 GO:0030599|GO:0042545
Tsu02g04376 459 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 113 IPR035513 -
Tsu02g04376 459 ProSitePatterns Pectinesterase signature 2. 291 300 IPR033131 -
Tsu02g04376 459 PANTHER PECTINESTERASE 1 458 - -
Tsu02g04376 459 Pfam Plant invertase/pectin methylesterase inhibitor 3 109 IPR006501 GO:0004857
Tsu02g04376 459 Gene3D - 140 459 IPR012334 -
Tsu02g04376 459 CDD PMEI-like_3 2 115 - -
Tsu02g04376 459 SUPERFAMILY Pectin lyase-like 143 458 IPR011050 -
Tsu02g04376 459 PANTHER PECTINESTERASE 1 458 - -
Tsu02g04376 459 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 14 110 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04376 Tsu-Chr2 52454791 52457071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04376 1 459 Carbohydrate Esterase AT3G47400 58.263 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04376 K01051 - gmx:100806133 736.487