Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04368 ATGGTGTTACTTAGAAGTTTCTTGTTGACACTATTTCAATGTTGTGTCTTAtcttggtttttttgtttgtctttgaGTCTTGACAATGGAACAAAATCATGTAATCCCAGTGATTTAGCAGCTCTTAAGGATTTTGCAGGAAACCTTACAAATGGTTCAATTGTGAAAGCATGGTCTAATGATAGTGTTTGTTGCAATTGGATTGGAGTTTTTTGTGGTGATAATAATGGTGAATCTGTTAATAGAGTGACAAAGTTGATCCTTTCTGAGATGAGTCTAAATGGAACAATTTCACCTTCTTTAGCAAAACTTGATCAACTCAATGTGTTGAATCTTTCATTCAATCATCTTGAGGGTAAATTGCCTTCAGAATTTTCCAACTTGAAGATGTTGAAGTTTCTTGATTTGAGCTATAACATGTTATCAGGACCTGTTGCTGATGCAATTTCTGGTTTGGATTCCATTGAAGTGTTGAATATTTCAAGCAATTCATTTTCTGAAGAGTTTTTTCATCTTGTGGAATTTCCACATCTACTTGCTCTCAATGTGAGTAACAATTCATTCACAGGTAGATTCAGTTCTCGACTTTGCAATTCTTCTAAGAATCTTCACACACTTCATTTATCTTCAAACAATTTTGATGGTAATCTTGAAAGTTTGAACAACTGTAACAAATCTCTTCAAAGGTTGCATTTGGATTCAAATTCATTTTCTGGCCCTTTACCAGATTCTTTGTATTCAATGTTAGCCTTGGAGCAATTATCACTCTCTGGCAACAATTTTTCTGGCCAATTAAGCAATGAGTTAAGTAAGCTTTCTAGCCTAAAATCTCTTGTGGTTTCTGCAAACCGTTTTTCAGGCGAAATTCCAAATGTTTTTGAGAACTTTTTGCAGTTAGAACAATTTGTAGGACATGCAAATTCATTTTCTGGATCATTACCTTCCACTTTGGCTTTTTGCACTAAGCTTAGAGTTCTTGATCTTAAGAATAATTCATTGTCAGGTTCAATTGATCTTAATTTCACTGGTTTGTCCAATCTTTGTTCACTCGATCTTGCTAGTAATCATTTTACCGGACCACTTCCGAGTTCATTGTCCTATTGTCATGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTATACCTGAAAGCTATGCCAAATTATCTTCTCTTTTGTTTGTGTCATTTTCAAACAATAGTTTAGAAAATTTATCTGGTGCACTTTCTGTTCTTCAGAAGTGCAAAAACCTCACAACTCTAATCCTCACTAAGAATTTCCGCGGCGAAGAAATTCCGCAAAGTGTACCATCAACAGGATTTGAGAGTCTTATGGTGTTAGCACTTGGAAACTGTGGTCTTAAAAGTTATATTCCTTCTTGGCTATTAAAATGCAAGAAATTGGCGGTACTTGATTTGTCTTGGAACTCATTGAATGGTAGTATTCCTTCGTGGATCGGTGAAATGGACAGTTTGTTCTATTTGGATTTCTCGAACAATTCTCTCACGGGAGAAATACCAAAAAGTTTGACAGAGTTGAAGGGATTGGTTTGTTCAAAATGTGGAAGACCGAATTTTGCTTCTTATGCTTTCATTCCTCTCTTTGTGAAGAGAAATACTAGTGCTAGTGGTTTGCAATATAATCAAGCTTCAAGTTTCCCTCCTTCAATTTTATTGAGCAATAACATGTTAAATGGAAGTATATGGCCCGAAATCGGTAACTTGAAGGCACTTCATGTGATGGATTTCAGCAGGAACAATATCAGCGGCAAAATTCCGAGTAGTATTTCAGCGATGGAGAATTTGGAAACATTGGATTTATCTTATAATGATCTATCTGGAACAATCCCTCCTTCATTTAATAACCTCACATTCTTGTCAAAGTTCAGTGTGGCGCATAATCACTTGCAAGGACCGATTCCAAGTGGAGGGCAGTTTCTAGGCTTCCCTAGTTCAAGCTTTGAGGGTAATTTGGGACTTTGCAGGGACATTGATATTGATAGTACTCGATGCAAAGTTGTTAACAACATGAGACCAAGTTTATCTTCTGGTTCGTCGAAAAAAATTAGTAGAAGCAGTGTAGTTGGCATTACAATCAGCATAGGGATAGGGCTTGCTTTGTTGCTTGCAGTTATTGTGCTAAGAATGTCGAAGAGGGAAGAAGATAAACCTATTGATAACTTTGACGAGGAGATGAATACTAGGAGGTCACACAGGTTATCGTCTGAAGCATTTGTTTCATCTAAATTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTTCTGATTTGTTAAAAGCAACAAACAATTTCAACCAGGCAAACATTGTTGGATGTGGTGGCTTTGGTCTTGTTTACAAGGCGTATCTTCCGAATGGCATGAAAGCGGCTGTCAAGAGGCTTTCTGGCGACTGTGGTCAGATGGAACGTGAGTTCCAAGCCGAAGTTGAAGCCCTCTCGAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTCGGCATGGCAATGACAGATTGCTAATTTACTCGTATATGGAGAATGGTAGCTTGGATTATTGGCTTCATGAGTGTGTGGATGGAAATTCAGCTCTGAAATGGGATATACGACTCAAGATTGCACAAGGCTCGGCTCGTGGATTAGCTTACTTGCACAAGGGGTGTGAACCGTTCATAGTCCACCGCGACGTTAAATCTAGCAACATACTTTTGGATGATAAATTTGAAGCTCATTTGGCCGATTTTGGTCTCTCAAGACTACTTTCACCGTACGATACTCATGTCACAACAGACTTAGTAGGAACTTTAGGGTATATTCCTCCAGAATATAGTCAGACACTGACAGCAACATTCCGCGGTGATGTCTATAGTTTTGGTGTTGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGTGGAAGTCATCAAGGGCAAAAATTGCAGGAACTTGGTATCCTGGGTTTATCAGATGAAATATGAAAAGAAGGAGCAAGAAATTTTCGATCAAGCCATTTGGGAAAAGGAGAGGGAGAAACAACTATTGGAGGTTCTCGGCATTGCTTGTAAATGTCTAGACCAAGATCCAAGACAAAGACCTTCTATTGAAATGGTTGTTTCATGGCTTGATAATGTAAGATTTGATGGCATTCAACAATGA 3174 0.3781 MVLLRSFLLTLFQCCVLSWFFCLSLSLDNGTKSCNPSDLAALKDFAGNLTNGSIVKAWSNDSVCCNWIGVFCGDNNGESVNRVTKLILSEMSLNGTISPSLAKLDQLNVLNLSFNHLEGKLPSEFSNLKMLKFLDLSYNMLSGPVADAISGLDSIEVLNISSNSFSEEFFHLVEFPHLLALNVSNNSFTGRFSSRLCNSSKNLHTLHLSSNNFDGNLESLNNCNKSLQRLHLDSNSFSGPLPDSLYSMLALEQLSLSGNNFSGQLSNELSKLSSLKSLVVSANRFSGEIPNVFENFLQLEQFVGHANSFSGSLPSTLAFCTKLRVLDLKNNSLSGSIDLNFTGLSNLCSLDLASNHFTGPLPSSLSYCHELKVLSLARNGLNGSIPESYAKLSSLLFVSFSNNSLENLSGALSVLQKCKNLTTLILTKNFRGEEIPQSVPSTGFESLMVLALGNCGLKSYIPSWLLKCKKLAVLDLSWNSLNGSIPSWIGEMDSLFYLDFSNNSLTGEIPKSLTELKGLVCSKCGRPNFASYAFIPLFVKRNTSASGLQYNQASSFPPSILLSNNMLNGSIWPEIGNLKALHVMDFSRNNISGKIPSSISAMENLETLDLSYNDLSGTIPPSFNNLTFLSKFSVAHNHLQGPIPSGGQFLGFPSSSFEGNLGLCRDIDIDSTRCKVVNNMRPSLSSGSSKKISRSSVVGITISIGIGLALLLAVIVLRMSKREEDKPIDNFDEEMNTRRSHRLSSEAFVSSKLVLFQNSDCKDLTVSDLLKATNNFNQANIVGCGGFGLVYKAYLPNGMKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYMENGSLDYWLHECVDGNSALKWDIRLKIAQGSARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLSPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKYEKKEQEIFDQAIWEKEREKQLLEVLGIACKCLDQDPRQRPSIEMVVSWLDNVRFDGIQQ 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04368 1057 ProSitePatterns Serine/Threonine protein kinases active-site signature. 898 910 IPR008271 GO:0004672|GO:0006468
Tsu02g04368 1057 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Tsu02g04368 1057 PANTHER PHYTOSULFOKINE RECEPTOR 2 460 516 - -
Tsu02g04368 1057 PANTHER PHYTOSULFOKINE RECEPTOR 2 560 617 - -
Tsu02g04368 1057 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 164 - -
Tsu02g04368 1057 Pfam Leucine Rich Repeat 604 626 IPR001611 GO:0005515
Tsu02g04368 1057 Pfam Protein kinase domain 777 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04368 1057 ProSiteProfiles Protein kinase domain profile. 776 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04368 1057 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Tsu02g04368 1057 ProSitePatterns Protein kinases ATP-binding region signature. 782 804 IPR017441 GO:0005524
Tsu02g04368 1057 SMART serkin_6 776 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04368 1057 PANTHER PHYTOSULFOKINE RECEPTOR 2 615 1050 - -
Tsu02g04368 1057 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 281 439 - -
Tsu02g04368 1057 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 615 1050 - -
Tsu02g04368 1057 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 164 - -
Tsu02g04368 1057 PANTHER PHYTOSULFOKINE RECEPTOR 2 281 439 - -
Tsu02g04368 1057 PANTHER PHYTOSULFOKINE RECEPTOR 2 177 281 - -
Tsu02g04368 1057 SUPERFAMILY L domain-like 211 510 - -
Tsu02g04368 1057 Gene3D Ribonuclease Inhibitor 305 678 IPR032675 -
Tsu02g04368 1057 PRINTS Leucine-rich repeat signature 131 144 - -
Tsu02g04368 1057 PRINTS Leucine-rich repeat signature 602 615 - -
Tsu02g04368 1057 SUPERFAMILY L domain-like 34 301 - -
Tsu02g04368 1057 CDD STKc_IRAK 782 1049 - -
Tsu02g04368 1057 Gene3D Phosphorylase Kinase; domain 1 734 851 - -
Tsu02g04368 1057 SMART LRR_typ_2 104 127 IPR003591 -
Tsu02g04368 1057 SMART LRR_typ_2 272 295 IPR003591 -
Tsu02g04368 1057 SMART LRR_typ_2 344 368 IPR003591 -
Tsu02g04368 1057 SMART LRR_typ_2 602 625 IPR003591 -
Tsu02g04368 1057 SMART LRR_typ_2 392 415 IPR003591 -
Tsu02g04368 1057 SMART LRR_typ_2 492 516 IPR003591 -
Tsu02g04368 1057 SMART LRR_typ_2 128 151 IPR003591 -
Tsu02g04368 1057 SUPERFAMILY L domain-like 445 645 - -
Tsu02g04368 1057 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 460 516 - -
Tsu02g04368 1057 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 560 617 - -
Tsu02g04368 1057 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 177 281 - -
Tsu02g04368 1057 SUPERFAMILY Protein kinase-like (PK-like) 757 1047 IPR011009 -
Tsu02g04368 1057 Gene3D Transferase(Phosphotransferase) domain 1 852 1053 - -
Tsu02g04368 1057 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Tsu02g04368 1057 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Tsu02g04368 1057 Pfam Leucine rich repeat 106 164 IPR001611 GO:0005515
Tsu02g04368 1057 Gene3D Ribonuclease Inhibitor 33 303 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04368 Tsu-Chr2 52339797 52343906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04368 65 1053 Receptor kinase-like Gene Family AT1G55610 34.455 9.90e-165 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Tsu02g04368 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04368 - - mtr:MTR_2g078810 1808.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04368 02 52339797 52343906 Tsu02g04368 02 52339797 52343906 ECH