Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04365 ATGGAAGCTAGCAGTAGTACTATAGAGAGGAAGCAAATATTTgaagaaatagaaaatgaagagaaggaagaagaggatgaaaatggtggtgttgaagaagttgagaaaAAGAAAGTTGTTTGTGTAAGTGGAAGAAAAGGAAGATTTTCAACACCTATTTGTCAAGCAGAAAATTGTGAAGCTGATTTAACTTTTATGAAAAGATATCATCGTCGCCATAAGGTTTGTGAGTTTCATTCTAAGGTACCTTATGTGATGATTGCAGGGTTGAGACAGAGGTTTTGCCAACAATGTAGCAGGTCTGTTCAATCTCCATCCCTTACTAATTTGAATTGA 336 0.2887 MEASSSTIERKQIFEEIENEEKEEEDENGGVEEVEKKKVVCVSGRKGRFSTPICQAENCEADLTFMKRYHRRHKVCEFHSKVPYVMIAGLRQRFCQQCSRSVQSPSLTNLN 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04365 111 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 100 - -
Tsu02g04365 111 Coils Coil 14 37 - -
Tsu02g04365 111 Gene3D - 49 104 IPR036893 GO:0003677|GO:0005634
Tsu02g04365 111 ProSiteProfiles Zinc finger SBP-type profile. 51 111 IPR004333 GO:0003677
Tsu02g04365 111 MobiDBLite consensus disorder prediction 1 32 - -
Tsu02g04365 111 SUPERFAMILY SBT domain 52 101 IPR036893 GO:0003677|GO:0005634
Tsu02g04365 111 Pfam SBP domain 54 100 IPR004333 GO:0003677
Tsu02g04365 111 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 100 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04365 Tsu-Chr2 52310334 52310669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04365 43 102 SBP-box Gene Family AT1G02065 68.333 1.68e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu02g04365 SBP 4.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04365 - - mtr:MTR_2g078770 112.464