Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04358 atggAAAGTTTCTTCCACCACCACATGaacaacaccaccaccaccaccaccaccaacaatgATGCACATTTACCACCTGGTTTTCGTTTCCACCCAACAGATGAAGAACTCATAACATTCTACCTTCTTAAAAAAGTACTTGACAACACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTTAACAAGTGTGAACCATGGGAACTACCAGAAAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTTAGTTTACGTGACAGAAAATATCCAACTGGGTTGCGTACAAATAGAGCCACTGAAGCTGGTTACTGGAAAGCAACAGGAAAAGACAGAGAGATTTATAGCTCAAAAACTTACTCTCTTGTTGGTATGAAGAAAACCCTTGTTTTCTATAGAGGTAGAGCTCCTAAAGGTGAAAAAAGTAACTGGGTTATGCATGAATATCGTCTTGAAGGAAAATTTGCTTATCATTTTCTCTCAAGAAACTCCAAGGATGAATGGGTCATTTCACGTGTGTTTCAAAAGAGCAACACTGGAAACGGTGGCACCACCGTGTCGGCCGCCACAAGTGGTTCAAAAAAGACCAAATTAGCCTCAACAAACTCTGCAAGCAACAATAGTATGAGTCTTTGTCCTGAACCAAGTTCACCGTCTTCGGTTTATCTTCCACCTCTTCTTGATTCATCTCCTTATGCCGCTGCTAGCACCGCCGCATTCAACGGCGGTCAAATGTGTAACTACAATAGCTCCAACAACAACACTGAACAAAAGGAGCACGTGTCCTGTTTCTCCACAACATCTACAACATCAAATGTTGTCTCTGTTCATAAcaacaacttcaacaacaataacaatggAAGTTTTGATCTTGTTTCTCCTATGAATGCCAACATTGATCCTTTTGCAAGGTTCCAAAGAAATGTTGGTGTTTCTGCTTTTCCTAGCTTGAGATCACTACAAGATAATCTTCagcttcctttctttttctccccGGCCGCGGCACAGCCTTttaatggtggtggtggtgattttCTTGGTGGTTGGGGAATGCCGCCGGCAGAGGATCAAAGGGTGGTGGTTGATGGTGGTGGTCACACAATGGGAGGACTGGGTTCATCTGAGCTTGATTGCATGTGGAACTACTAA 1149 0.3856 MESFFHHHMNNTTTTTTTNNDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGNGGTTVSAATSGSKKTKLASTNSASNNSMSLCPEPSSPSSVYLPPLLDSSPYAAASTAAFNGGQMCNYNSSNNNTEQKEHVSCFSTTSTTSNVVSVHNNNFNNNNNGSFDLVSPMNANIDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSPAAAQPFNGGGGDFLGGWGMPPAEDQRVVVDGGGHTMGGLGSSELDCMWNY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04358 382 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g04358 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 379 - -
Tsu02g04358 382 SUPERFAMILY NAC domain 16 176 IPR036093 GO:0003677|GO:0006355
Tsu02g04358 382 Pfam No apical meristem (NAM) protein 25 151 IPR003441 GO:0003677|GO:0006355
Tsu02g04358 382 ProSiteProfiles NAC domain profile. 24 176 IPR003441 GO:0003677|GO:0006355
Tsu02g04358 382 Gene3D NAC domain 33 180 IPR036093 GO:0003677|GO:0006355
Tsu02g04358 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 15 379 - -
Tsu02g04358 382 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g04358 382 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04358 Tsu-Chr2 52173262 52175537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04358 20 382 NAC Transcription Factor Family AT5G53950 52.430 8.44e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g04358 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04358 - - cam:101501114 515.768