Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04350 atggctCCAagagacaacaacaacaacaacagagtTACCACCACCGCGGTTTCTGGGCCTAACCCAACGGCCCAAGCCCAAACTCAGGCCCAAAAAGAGATCCGTTTCAGAGGAGTTAGAAAACGTCCATGGGGTCGTTACGCCGCTGAGATCCGTGACCCAGGTAAAAAGACACGTGTCTGGTTAGGAACATTTGACACCGCAGAAGAAGCGGCGCGTGCTTACGACACAGCGGCACGTGAGTTTCGTGGTTCAAAAGCGAAAACAAATTTCCCAACACCGATGGAAATTATTAATAACCGTAGCCCAAGCCAAAGTAGTACCCTTGAATCACCTTCACCACCGCCGCTTGATCTAACACTCACACCATTCTCTGGTTTCTCCGCCGCCACCGGTGTTACGGTTGCTTTTCCGGTTGCTCGTTCGGTTATGTTTTTCGACGCTTTTGCACGGAATGAAACAAAGCTTAGCGTTGTTGGTAGACGTGAGATGTGTGGATTTGATCTTCCTATGGCTGATTTTCGACGCGCCGCCGTACAGAGTAGTGACTCTGGTTCATCTTCTTCTGTTGTTGATTATGAACGTGTGCCACGTCAGAGACACTTGGATCTTGATCTTAATGTTCCACCTCCACCTGAAGTTGCTTAA 648 0.4707 MAPRDNNNNNRVTTTAVSGPNPTAQAQTQAQKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPTPMEIINNRSPSQSSTLESPSPPPLDLTLTPFSGFSAATGVTVAFPVARSVMFFDAFARNETKLSVVGRREMCGFDLPMADFRRAAVQSSDSGSSSSVVDYERVPRQRHLDLDLNVPPPPEVA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04350 215 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Tsu02g04350 215 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Tsu02g04350 215 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Tsu02g04350 215 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Tsu02g04350 215 MobiDBLite consensus disorder prediction 88 116 - -
Tsu02g04350 215 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Tsu02g04350 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 199 - -
Tsu02g04350 215 MobiDBLite consensus disorder prediction 1 32 - -
Tsu02g04350 215 PANTHER ERF FAMILY PROTEIN 1 199 - -
Tsu02g04350 215 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Tsu02g04350 215 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Tsu02g04350 215 MobiDBLite consensus disorder prediction 92 115 - -
Tsu02g04350 215 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04350 Tsu-Chr2 52074781 52075889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04350 20 117 AP2-EREBP Transcription Factor Family AT3G15210 72.642 8.88e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g04350 AP2 9.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04350 K09286 - gmx:100500601 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02901 02 31918683 31920025 Tsu02g04350 02 52074781 52075889 ECH
Tsu02g04350 02 52074781 52075889 Tsu08g04048 08 58724435 58725698 ECH
Tsu02g04350 02 52074781 52075889 Tsu02g04350 02 52074781 52075889 ECH