Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04345 ATGcgatcatcatcttcttcatcggGTAGGGGAGACGGTGGATCAGGTTTGAGGGTTAAGAAGAAACATAAGAAGTTAGATGCAATATGTGAGGAAGAGTATAATCGAAATCATGGCGAGTTGAATGAGGGTGATGATTTGGATGTTGATTTGGGGGTTCGGAGAAGCTCAAGGGTTAGGCGTGCCCCGGTTTTACTTGATGCTTCTCCTTCGCCCAAGAGGAAACGGCAGAAATTAGGGAAAGATGTAATGCCAAAGAGTGTGGAAAGTGATAGGAGTTTAGGGAGAGAAATCGGTGATTCTGGTGGTGGGAGATGGAGTTTGAGATCGAGATCAAGGGGTAAGAATGTGGAATTTGAGGTGAAGGAGGAGAAGGAATTGCCTCGGAGGAAAAGGAAGCTGTTTGATGAGGAGTTGGAGGTTGTGGAGGTTGATACGAAGGACGAATTGGAGGTTGTGGAGGGAGTTAGGGAAGAAGAATTGGAGGTTGTGGAGGGCAATAGGGAGGAGGAATTGAAGGTTGTGGAGGGTGATAGGGTGGAGGAATTGGAGGTTGTGGAGGATGATAGAAAGGAGGGATTGGAGGTTGATAAGAAAGAGGATTTTAAATGGTTTACGCGAAGAAGGTTTAAGTCGAAGAAGAGAACGGGGAAAATTGAAGCGACAAACTATGAAAAAGGGCTTATGGAAAACGAGTTTCAAGAAGTGGAGCTTGTAGTTGACTTGAATAAAGGTGAGGGGAGTGTTTCGGTTCCAGAGACCGAATTGGCTGATGAGGATCCAACAGATTTGAGGTATGAGAATGCTGCTTCCGCGACAGGGAACAAGGAGAGAATTGAAACAGACAATTTGCAAGCTGAGGAGTGCAATGGTGATGTTGAACCGTCTCAGATGGAATGTGTAGAAATTGAGGATGAACAGGGTGATCAGTTAGAGAGTGAGAAGGATGGAAAAGATGGTAGTGATGTGGCTGAATTTGCTGCAGTTTCAACTGAACGTGTAGATAATGAAGGTTCTGTTGATAAGGAGGTTGGCATTGATGAAAATGTCTCAAAAGATATGAATGTTGAGAGAACAGATGAGTTGAAACAAGCATCAAAGGACAAGTCTGAGTACCGATGTATCAAAGAGGGAAGACGGTGTGGATTGTGTGGAAGAGGGAGCGATGGTAAGCCTCCAAAAAGGTTAATTCAGGATAATGGTGAAAGTGAGAACGAAGCCTATAGTGGGTCATCAGCTTCAGAGGAGCCCACTTACGATACCTGGGATGGCTTTGATGATGAACCTGGCTGGCTCGGGCGTCTCTTGGGCCCTATTAATGATCGTTACGGTATTGCTGGAATATGGGTGCATCAGAATTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGTTGCTTGAAAAATGTGAGGGCTGCACTTTGTCGAGGAAGAGCATTGAAGTGCACACGTTGTGGGAGGCGAGGGGCAACCATTGGTTGTCGTGTTGATCGTTGTCCTAAAACCTATCATTTGCCTTGTGCTAGAGCAAATGGTTGCATCTTTGATCATCGCAAATTTCTTATAGCTTGTACAGACCATCGACATCTTTTCCAACCTTCTGGTAATAAATATTTCGCCCGGATAAAGAAGTTGAAGGCTAGGAAAATGATGTGGGAGACAAAGAAGCGTTCAAATGATGCTTCGAGAAAGGATATTGATGCAGAAGAGAGATGGTTGGAAAATTGTGGGGAGGATGAAGAGTTTTTGAAACGCGAGAACAAGAGGCTTCATCGTGATTTATTAAGAATAGCCCCAGTGTATATTGGTGGTTCAGATTCTGCTGCCAGTGAAAATTCATTTCAGGGATGGGAATCCGTTGCTGGGCTTAAAGATGTCATCCGTTGTATGAAAGAAGTTGTTATTATTCCTCTGCTATATCCTAATTTCTTCGATAACTTAGGACTTACGCCTCCAAGAGGCGTTCTTTTGCATGGGTATCCTGGAACAGGGAAAACCTTAGTAGTCCGGTCATTGATAGGTGCATGTGCTCGTGGAGATAGACGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATACGTCGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAGATAGATGGACTGGCACCTTGCCGAACTCGACAGCAAGATCAGACTCATAGTTCTGTCGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGATCAGTTGTAGTCATAGGTGCTACAAACCGTCCTGAAGCTGTTGACCCTGCACTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTACTTTCCATTGCCGTCAACTGAAGACAGAGCTTCCATTCTCTCACTTCACACACAGAAATGGCCAAAACCAATTAGTGGATCCTTGCTTGGGTGGATTGCAAAAAAGACTTCTGGGTTTGCTGGTGCTGATCTCCAGGCTCTTTGTACACAAGCGGCCATGAATGCCCTGAAGAGGAACTTCCCTTTGCAAGAGGTGCTATCTGTAGCTGAAAAAAGACATTCTTCTGGTTGTAAGAACACTCCTCTTCCATCCTTTACTGTGGAGGAGAGGGATTGGGTAGAAGCTTTTTTGTCTTCACCATTACCTTGTTCCCAGAGAGAAGCTGGAAATGCTGCAAATGATGTAGTATGCTCCCCTCTTCCTGTCCAACTTGTTCCTTGTTTACTGCGGCCATTATGCACTATTCTTTTATCTCTTTATCTCGATGAACGTCTGTGGTTGCCAGCTCCTATATCGAAAGCCGTGACATTGATCAAGAATGTAATGGTTTGTGCTCTAGACAAAAGGAAAATGCCTACTGATCATTGGTGGTTGCACCTCGATGATTTTCTTCAAGAAACAAACGTTGCTTATGATGTAAGTAAGTGCCTTAGTTGTTCTGGCATTTTATCTGCAAACCGTGGCTTTTCTGGTTCTTGTGATATTGTGGATCATGATGATGATAAACCCTCCTTAAAGAACCATGCTAGCATGCGTAATGGTAGATTACCAGACATGTCATTTGCATCGACCAACAAATCAGGATTTCGAATATTGATTTACGGAAATCCGCGGTCTGGCCAGAGACATCTTGCTTCATGCCTTCTTTACTGTTTTGTTGGAAATATTGAAGTACAAAAGATTGATATGGCAACTATTACACAAGAAGGGCATGGAGATGTTGTGCAAGGGATTTCGCAAATATTAATGAAATGTGCTAGCATGAAATCTTGTGTAATATTCATGCCAAGAGTTGATTTGTGGGCTGTGGTGGAAGATTTCCAAATTGCTGAGAAGACTGATTCTTGCTCAATAAATCATCTATCATCTGAGACGGACACGTCTTCTTTCACTCCAAGCCAAATTGTTGAGAAGGAAAATGGGATCAATACTGGGAAAAACTCAGCAGAGATGACCAAATGCCAAGCCAACAAAAAGGCTTCATATGCCTGGATGTCGTTTATTGAGCAGGTGGAGTCCATTGGTTCATCCACATCCTTGATGATTCTGGCTACTTCAGAAGCTCCCTATACTGAACTTCCACACAAGATAAGAGGATTCTTCAAGAGCTATCAATCTAAGGATACACAATCAAGTCCTTTAGTACAAACAGTTCCTCAATTCTCTCTGCAGATTGATGGGAATTTTGATCACGACTTGGCGATCAATCTTTCTGCAATCGAGCTTTTAAGAACTGTAGTTGAGCAGCGGGTTCAATTGATTCATCAGAGATCTCACGCTGGCATGGGTGTCCATAAAGGAGACATAGCATATGAGTCAATTGAAGTTTGTAAAGAAAAGGTAACTCAGAGAAATGAAAACGAACCAGCCAACTCAAAGAAGGATGAAGTCCAATCTCCTGAATTCTTGACCAAAGGCCCACAGCCCAACAGTAGGTCACTGAAGGGAAAGTCGAATCTTGTAATGGCAATATCCACATTTGGCTATCAAATTCTTCTATACCCTCATTTTGCTGAACTTTGCTGGGTCACTTCAAAACTCAAAGAAGGTCCTTGTGCTGATGCGAGTGGGCCTTGGAGGGGTTGGCCTTTCAATTCATGTATAATTCGTCCTAACAATTCACAGGACAAGGTGGTAATTTCCAGTAGCTCTGGTGGCACAAAAAGCAAAGAAAGTGCTGGATTAGTTAGAGGCTTGGTTGCTGTTGGTTTATCAGCATACAAAGGTGTTTATAAATCAGTTAGGGAAGTTTCCAATGAGGTAAGGGAAGTGCTCGAGATCTTAACTGAGACCATTAACATGAAAATTCAAGCTGGGAAAAACAGATATCGGTATCTGCGTATTTTATCACAAGTTGCTTATTTGGAAGATATGGTCAACAACTGGGCTTATGCATTGCTTAGTCTAGATCAGGATTCTCCAGAGCTTGCAGCAAAGGTTATACCAGCCGCTGCCGGGCCTTTAAACAGTCATCTCGCATGTGAAGACCACCACCAAGCCGAAGGTGAGGATTGTCATTTAGTTGTTTCTGCTAATGGTGATGATTTGGAGACACTGGCGAGAAGTCCTAAGGGAGTTCCTACTGCAACAACCGAGCGGCTTTCCTTGAATGAAATAAATCATAATTTAGGTAATACCGATTGTAACGGCCAAAAAGCATGTTCTGAAGGATCTCCGCGTAACCGTCCTTGTCCAGATACGCGTATTAATGATTCTTCTCCTGGAAACCAACCTCTTCATCCATCCTTGAATCAGGAGAATGAGGTATTACCTGGACTGTCTGAATCAGCAACTGCTGAAAATCACGACACTGCAGATGGAGAACTTGGAATGTTGAAAGACTTGAATAAATCAACATGCACTGACTCTGCTGTCCTTTCTGAAAATGGATTTCACACAACCGGTGAACAAGAGAGTGTTGAGATTGGTAACTTAAAATCAAGTGAAGTTGAATCTGATAAACATGAGAATACTAGAGATATCAATTCCTCTTCAAGTAAGGACAGTGGTCCAGCTGAATCTGGAGTTGTTTGCTTTTATCAATGTTGCCCTCAATGTCTCTGCAGTCTCTATAATTTGACACGCAAAATGCTCGTTCGCGGGTGGGGATCAAATAAAAGCCATTGGACAATAGAAGATGTCCATGATGCTGTTTCGACATTATCTGTAGATCTTATTTCAGAAGTTAGAAAATGTTACATGGTGGAAGATTTCACTGATTTATCTAATAAAACGTCAAGACATGAAAAACATGCAACATTTCTGATAACGTGCAATACCGAAAACCGAGGCAAAGATGTTTTGCCAGCTGAATGCGTTTCTCACTTGGCGAGCCAAGGTACAAGTGTAAGCAAAGACACAGTATCGAATGAGCCAGCAAATCTTGATCTGAAATTTGTTTTCAGAGATGGTGTGTTAGTTCCTGCAGACCCTGCAAAGGATGCCCCTCTTCACTGTACATTTGAGAAATTGTGTCTCTGTTCACTGATAGAGTTAATAGTAAAAGCTAAGGGACCTTTAGATTAA 5553 0.4263 MRSSSSSSGRGDGGSGLRVKKKHKKLDAICEEEYNRNHGELNEGDDLDVDLGVRRSSRVRRAPVLLDASPSPKRKRQKLGKDVMPKSVESDRSLGREIGDSGGGRWSLRSRSRGKNVEFEVKEEKELPRRKRKLFDEELEVVEVDTKDELEVVEGVREEELEVVEGNREEELKVVEGDRVEELEVVEDDRKEGLEVDKKEDFKWFTRRRFKSKKRTGKIEATNYEKGLMENEFQEVELVVDLNKGEGSVSVPETELADEDPTDLRYENAASATGNKERIETDNLQAEECNGDVEPSQMECVEIEDEQGDQLESEKDGKDGSDVAEFAAVSTERVDNEGSVDKEVGIDENVSKDMNVERTDELKQASKDKSEYRCIKEGRRCGLCGRGSDGKPPKRLIQDNGESENEAYSGSSASEEPTYDTWDGFDDEPGWLGRLLGPINDRYGIAGIWVHQNCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHLFQPSGNKYFARIKKLKARKMMWETKKRSNDASRKDIDAEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSAASENSFQGWESVAGLKDVIRCMKEVVIIPLLYPNFFDNLGLTPPRGVLLHGYPGTGKTLVVRSLIGACARGDRRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSTEDRASILSLHTQKWPKPISGSLLGWIAKKTSGFAGADLQALCTQAAMNALKRNFPLQEVLSVAEKRHSSGCKNTPLPSFTVEERDWVEAFLSSPLPCSQREAGNAANDVVCSPLPVQLVPCLLRPLCTILLSLYLDERLWLPAPISKAVTLIKNVMVCALDKRKMPTDHWWLHLDDFLQETNVAYDVSKCLSCSGILSANRGFSGSCDIVDHDDDKPSLKNHASMRNGRLPDMSFASTNKSGFRILIYGNPRSGQRHLASCLLYCFVGNIEVQKIDMATITQEGHGDVVQGISQILMKCASMKSCVIFMPRVDLWAVVEDFQIAEKTDSCSINHLSSETDTSSFTPSQIVEKENGINTGKNSAEMTKCQANKKASYAWMSFIEQVESIGSSTSLMILATSEAPYTELPHKIRGFFKSYQSKDTQSSPLVQTVPQFSLQIDGNFDHDLAINLSAIELLRTVVEQRVQLIHQRSHAGMGVHKGDIAYESIEVCKEKVTQRNENEPANSKKDEVQSPEFLTKGPQPNSRSLKGKSNLVMAISTFGYQILLYPHFAELCWVTSKLKEGPCADASGPWRGWPFNSCIIRPNNSQDKVVISSSSGGTKSKESAGLVRGLVAVGLSAYKGVYKSVREVSNEVREVLEILTETINMKIQAGKNRYRYLRILSQVAYLEDMVNNWAYALLSLDQDSPELAAKVIPAAAGPLNSHLACEDHHQAEGEDCHLVVSANGDDLETLARSPKGVPTATTERLSLNEINHNLGNTDCNGQKACSEGSPRNRPCPDTRINDSSPGNQPLHPSLNQENEVLPGLSESATAENHDTADGELGMLKDLNKSTCTDSAVLSENGFHTTGEQESVEIGNLKSSEVESDKHENTRDINSSSSKDSGPAESGVVCFYQCCPQCLCSLYNLTRKMLVRGWGSNKSHWTIEDVHDAVSTLSVDLISEVRKCYMVEDFTDLSNKTSRHEKHATFLITCNTENRGKDVLPAECVSHLASQGTSVSKDTVSNEPANLDLKFVFRDGVLVPADPAKDAPLHCTFEKLCLCSLIELIVKAKGPLD 1850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04345 1850 SMART AAA_5 653 794 IPR003593 -
Tsu02g04345 1850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 532 IPR013083 -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 1291 1324 - -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 1554 1594 - -
Tsu02g04345 1850 ProSitePatterns AAA-protein family signature. 762 780 IPR003960 GO:0005524|GO:0016887
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 1291 1309 - -
Tsu02g04345 1850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 850 IPR027417 -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 1637 1655 - -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 303 323 - -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 1637 1678 - -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 402 418 - -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 1656 1671 - -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 389 420 - -
Tsu02g04345 1850 Pfam PHD-like zinc-binding domain 451 530 - -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 1574 1594 - -
Tsu02g04345 1850 ProSiteProfiles Extended PHD (ePHD) domain profile. 418 530 IPR034732 -
Tsu02g04345 1850 Gene3D - 618 792 IPR027417 -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g04345 1850 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 50 1846 - -
Tsu02g04345 1850 Pfam ATPase family associated with various cellular activities (AAA) 657 792 IPR003959 GO:0005524|GO:0016887
Tsu02g04345 1850 CDD AAA 651 792 - -
Tsu02g04345 1850 Gene3D - 793 853 - -
Tsu02g04345 1850 PANTHER AAA DOMAIN-CONTAINING 50 1846 IPR045199 -
Tsu02g04345 1850 Pfam AAA+ lid domain 818 850 IPR041569 -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 71 98 - -
Tsu02g04345 1850 MobiDBLite consensus disorder prediction 59 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04345 Tsu-Chr2 52025174 52034920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04345 619 854 Calmodulin-binding Proteins AT3G56690 40.336 3.42e-44 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04345 - - gmx:100803849 2365.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04345 02 52025174 52034920 Tsu02g04345 02 52025174 52034920 ECH