Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04339 ATGGATCAAATGACAGATTCTGATATGGATCAACAACGGCAAGGCTATTTTCATTCTGAACCGTGTGTTCTTTTGAGAGGCCCCAATGTTGGACATCCTAATTTACGCTCAGTGGTGTCTGCTTCCGGGAATGCAACTAATGTTGATTCTCACTATTTACCAGATGCTTATGACAATGCTAGGGTGTATGGTATTACACAATACAATGGCATGCAGCCTCAACATAATCTCGAGATGGGCGTTGCAGCAGCTGGCAACATATATTATTCTGGCATGAATCCTTCTTCAAGTACTGGTGTTTTCCCTCTGCCTCATAGAGCCTCTGATCAGTTGCCAGGTTCAAGCACATTTGCAATCTCCGGTGTTTCCTTAGATAATTTTGGAAGAAGCGGTGGTTTCATGGATGATGCTAGAGGTCCGTACAAAAGGAAAGTTGCTGAAGGGATTAGAGGAAACCACCAACATTTTAATGCTTCAACTAGTTCTTCTATTGCTCCCCCAAATGCAAGACATGCTGATGGGGTTGCTATGATGGATACTGCACCATTGCCATTCCGTGTCCCTTCCCTCATTGGAGTAGGACCGCATGGCGGTGCATGGAGCAGATCAGGTGAGTCTATTATGGTGCATGACCATAACCATTTGATTCACGGAAACTATTTGGGGCAGCACTTTCCTCCAGCTGCTCCCCCTTGGTTGGACCAGCAAGTGAATACTAATAGCAATGATGGCCATACTGCTGCCTGGAATCCGTCTGTTCCAATGCCTTATATACAAgCACCCAATATTAATGGAAGTTCATTAGAGAGTGCAAGTATGGGTTTGCAGAGGTATCACGACGCAGCCGGTAACCGAAATATCCTGAGGTTTCCTCCTCCGCCTCCTCCTGTCAACCAACAGCACCCTAATTATCATCATCCAACACTTCCTATGCAAGGAATAAGAGGTCACAATATCAGCTTTCACCCTCCGGTAACTGCAGCTTCATTTAGGGTTCCTCCAAATCCTCCACGTGGTTCTGTGATCCCTCCACAGACTGGTTTTGAGGCAGGTCCTAGGCATATCATCCCTGCACCATCAACAGGCTTCCGGATTTACCGACCTCATAGGCTCATGCCAGAGACAGCTGTCGGACATCGAAGCCTACCTCCCGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGACGAAGTCGGAAATCTGATTGACCATCACCGAGATATGCGCTTGGACATAGAGGACATGTCTTATGAGGATCTACTAGCATTAGGCGAGAGGATTGGCAGTGTGAACACTGGTTTATCTGAGGAAACAATTGCGAATCAACTAAAGACAAAAGTTTATTCAACGAAAGCCACTGCTATTAATCTGGAGGAGGTAGCTTCTGATGATCAGGAAACTGAATCTTGCATAATTTGTCAGGATGATTTTAAGGACCAAGAGAAGATCGGGATTCTTCGATGCGAGCACGAATATCACGTGGATTGCTTAACGAAATGGTTGCTTGTGAAGAACGTCTGTCCGATATGCAAGTCAGAAGCTTTGGCTACCTGA 1557 0.4566 MDQMTDSDMDQQRQGYFHSEPCVLLRGPNVGHPNLRSVVSASGNATNVDSHYLPDAYDNARVYGITQYNGMQPQHNLEMGVAAAGNIYYSGMNPSSSTGVFPLPHRASDQLPGSSTFAISGVSLDNFGRSGGFMDDARGPYKRKVAEGIRGNHQHFNASTSSSIAPPNARHADGVAMMDTAPLPFRVPSLIGVGPHGGAWSRSGESIMVHDHNHLIHGNYLGQHFPPAAPPWLDQQVNTNSNDGHTAAWNPSVPMPYIQAPNINGSSLESASMGLQRYHDAAGNRNILRFPPPPPPVNQQHPNYHHPTLPMQGIRGHNISFHPPVTAASFRVPPNPPRGSVIPPQTGFEAGPRHIIPAPSTGFRIYRPHRLMPETAVGHRSLPPVGFLQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIANQLKTKVYSTKATAINLEEVASDDQETESCIICQDDFKDQEKIGILRCEHEYHVDCLTKWLLVKNVCPICKSEALAT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04339 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 516 IPR013083 -
Tsu02g04339 518 Pfam Ring finger domain 470 512 IPR001841 -
Tsu02g04339 518 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Tsu02g04339 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 517 IPR045191 GO:0061630
Tsu02g04339 518 SMART ring_2 471 511 IPR001841 -
Tsu02g04339 518 SUPERFAMILY RING/U-box 465 515 - -
Tsu02g04339 518 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 126 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04339 Tsu-Chr2 51961284 51963787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04339 388 518 C3H Transcription Factor Family AT2G15530 45.255 3.04e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04339 K19041 - gmx:100800642 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04339 02 51961284 51963787 Tsu02g04339 02 51961284 51963787 ECH