Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04328 ATGAACATGATACCGCAAAATGGTGAAGCAATTGAGGCTTTATCTGGTGctccaattttccttcccgATCCAAATGACGCTGATTTAAATTTCGAATTTTGCAGTGTTAGCATCTATAAATATGGGTTGAGGATGGAAGGTAAGAGGACTGTAGAGTTAGGGTTCTTCATTTGTGGAAGggttttcggTTCCATCTTCTTGCTTGGCTTAGATGGAAAAGCTTTATATGGGGAATCATGGAGAATTAAGGTCATTGATGTTCTTCATCCTGGAAGAGCAAATGTTTCCAAGGTTGAGCTAAAGGAGAAGCTGGATAGAATCTATAATGTTAAGGACCCAAACACCGTCTTCATTTTCAAGTTCATAACTCATTTTGGTGGTGGCAAGTCTACAGGATTTGGTTTGATATGTGATTTTGTGGAGAATGCTAAGAAATATGAACCAAAATACAGACTTATCAGGGTGAGTTGA 471 0.3588 MNMIPQNGEAIEALSGAPIFLPDPNDADLNFEFCSVSIYKYGLRMEGKRTVELGFFICGRVFGSIFLLGLDGKALYGESWRIKVIDVLHPGRANVSKVELKEKLDRIYNVKDPNTVFIFKFITHFGGGKSTGFGLICDFVENAKKYEPKYRLIRVS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04328 156 PANTHER 40S RIBOSOMAL PROTEIN S24 83 154 IPR001976 GO:0003735|GO:0005840|GO:0006412
Tsu02g04328 156 Gene3D - 80 156 - -
Tsu02g04328 156 PANTHER 40S RIBOSOMAL PROTEIN S24 83 154 - -
Tsu02g04328 156 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 84 155 IPR012678 GO:0003735|GO:0005840|GO:0006412
Tsu02g04328 156 Pfam Ribosomal protein S24e 84 154 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04328 Tsu-Chr2 51843249 51845836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04328 84 154 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 81.690 8.02e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04328 K02974 - ncol:116246789 130.183