Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04315 ATGATGAACAACGGAGTGTCCACTCTCCGCACGTGCCTCCGCTTCCCGGAGCGCCCATTTTTTCGTTTAGCTCCGTTATCCTTCCGTTTCCGGCGCCGGTTTCTGGTAACTGCATCAGTaacagagaaaaagaaagagaaggtGATAGTTATTTCTGGACCTACCGGTTCTGGCAAAAGTCGCCTCGCAATGGAACTCGCAAAACGCCTCAATGGCGAAATTGTTAGCGCCGATTCTGTTCAGGTGTATAAGGGTCTTGATATTGGATCTGCCAAGCCTTCCTTAAATGATAGAAAGGAAGTGCCGCATCATCTGGTTGACATACGTGACCCATCTGAAGATTATTCTGTTGGACAGTATTTTGAGGATGCAAGGCAAGCGACAAGATCTATTCTTGACAACGGCCGTGTTCCAATAGTTGTTGGGGGAACTGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTAAATCCTCTGCAGAGATAACATCTCAAGTATGTATGGAGTTAGCTGAACTACAGAGAAATAACGACTGGGAAGCTGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGTCCAACATATAGCAGTGAATGATTGGTACCGGTTACAGCGTAGTCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCAGCTTTTCGGGTACCATATGATTCTTTCAGGAAACAGGGTGATTGTAGAGTTGCTGATAGTTCTGATTCAGCTGATATGCATACTTATAATGATTCAATCAAAGAAAACACCAATTCAGCTAAGTTAGACTACGAGTTCAtgtgttttttcctttctaGCGACAGACTTGACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTATTAGGAGAAGATAGCATTTTATCTGAGGCTCAGTGGCTTCTTGATACCGGTCTTCATCCAAACTCCAACTCTGCAACAAAAGCAATTGGTTACAGACAAGCCACGGAGTACTTACTAGGATGCAGAGAACAAGGGGGTCAGAGTTCAGCTGGACAATTTTACAGATTTTTGTCTGAATTTCAAAAAGCATCACGGAATTTTGCGAAACGGCAGTTGACTTGGTTTCGAAATGAGCGTATATACCATTGGCTTGATGCTTCTAAACCTCTGGAAACTATTCTGAACTTCATTCATGACGCATACCATGATCGGAATGGAAGTCTATTTGTGCCCGAATACCTTAGAATGTCAAGAGATATTTCTGATTCTCGAACAGCTGGTAAACTAAAGGCTTACCGCACCAGAAATAGGCATTTTGTGAACGGGGAAGATTGTTATCCTATTTTGGAATGGATAAAGAAGACCCAAAAGTGA 1353 0.4161 MMNNGVSTLRTCLRFPERPFFRLAPLSFRFRRRFLVTASVTEKKKEKVIVISGPTGSGKSRLAMELAKRLNGEIVSADSVQVYKGLDIGSAKPSLNDRKEVPHHLVDIRDPSEDYSVGQYFEDARQATRSILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSSAEITSQVCMELAELQRNNDWEAAVQLVVKAGDPKVQHIAVNDWYRLQRSLEIIKSSGSPPSAFRVPYDSFRKQGDCRVADSSDSADMHTYNDSIKENTNSAKLDYEFMCFFLSSDRLDLYKSIDYRCEDMLLGEDSILSEAQWLLDTGLHPNSNSATKAIGYRQATEYLLGCREQGGQSSAGQFYRFLSEFQKASRNFAKRQLTWFRNERIYHWLDASKPLETILNFIHDAYHDRNGSLFVPEYLRMSRDISDSRTAGKLKAYRTRNRHFVNGEDCYPILEWIKKTQK 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04315 450 Hamap tRNA dimethylallyltransferase [miaA]. 48 388 IPR018022 GO:0008033
Tsu02g04315 450 Gene3D - 156 227 - -
Tsu02g04315 450 Pfam IPP transferase 81 371 - -
Tsu02g04315 450 TIGRFAM miaA: tRNA dimethylallyltransferase 48 225 IPR018022 GO:0008033
Tsu02g04315 450 Gene3D - 45 414 IPR027417 -
Tsu02g04315 450 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 38 449 - -
Tsu02g04315 450 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 38 449 IPR039657 -
Tsu02g04315 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 182 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04315 Tsu-Chr2 51586404 51592517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04315 51 293 C2H2 Transcription Factor Family AT2G27760 26.721 7.11e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04315 K00791 - gmx:100808814 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04315 02 51586404 51592517 Tsu02g04315 02 51586404 51592517 ECH