Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04312 ATGCACACAAACACAACAATGGCATCATCTTTCAATCCCATCTCAGGCAATAGAAAAACTTCATACAGATTAGAAACCAAAAACTTATCATACAGATTGTGCAGCCAACTTGATGAACTTAGAACTCTTTGTTTCGGTTCGAATCCTCGGAGAGGTTCAAAGTTCATTTTGAAGGATGTAAATTGTGAGGCAAGGCCGGGGGAGGTTACTGCTATTGCTGGTCCTAGTGGAGCTGGAAAAACAACACTGCTTGAAATTCTTGCCGGGAGAATACCCTCATGTAAAGTTTCGGGACAAGTACTTGTCAATCACATGCCTATGGATGTAAACAGATTCAGAAGAGAATCCGGCTACGTCACGCAAGAAGATGCTTTGTTTCCATCACTTACAGTTAGAGAGACACTCATGTATAGTGCTTTGTTGAGGCTTCCCGAGGGGAGAAAAGCGGCTGCTATGAGAGTTGCAGAGTTGATGAAGGAGCTCGGGTTGGATACTATTGCAGATTCAAGAATTGGCAATGGATCAGACCATGGTATATCGGGCGGGGAAAAGCGTAGAGTTTCCATTGGTGTTGACTTGGTTCATGACCCttcaattattttgattgatgaACCAACTTCAGGCTTGGATTCAGCATCAGCTCTTAAAGTAATCTCATTGCTTAGATTAATGGCATTTAATCAAGGTAAGACGGTTGTTTTAACTATCCACCAACCTGGTTTCCGAATCTTAGAGCTACTTGATAGCCTCATTTTGCTATCTGATGGATTTGTCATGCATAATGGTTCACTGAATCTACTCGAGGCAAGACTCAATTTATCCGGTCATCGCATTCCCAACCATGTCAATGTCCTAGAATTTGCTCTTGATGCCATGCAAACCTTGGTTATACATACTTCAGAATCTGGGAACAATCAATTTCCTATCAATGACAAAAATCACCAAGATCACAAGATGATGATGCAGTGCTCTATGATTGTCAAAGAAAAGGCTATTTCGTACTCAAATTCTCCAATGGAAGAGATTTTAATCCTAGGACAAAGATTttgcagcaacatattcagaaCCAAGCAACTCTTTGTTACAAGGGTCATACAAGCCTTAGTAGCTGGATTTGTATTGGGGACCATATTTTTAAATGTTGGCAACAAACAAAGTAAAGTAGCATTACAAACGCGAAGCGGCTTCTTCGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGGTTGCCTATTTTCTTAGAGGAGAGAAGAACTTTTATGAGAGAGACCTCGAGAGGAGCTTATAGAGTTTCTTCATATGTTTTAGCAAATACACTTGtgtttcttccttttcttctaaTGGTTGGTCTTCTATATACTACTCCAGTTTATTGGCTAGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTATTAATGTCGAATTCTCTCGTGGCTTGTTTCAGCGCCCTAGTGCCGAATTTCATCCTTGGAAGCTCGGTGATTGCCGGTCTAATGGGGTCTTTCTTTCTATTCTCAGGGTATTTCATATCAAAGGAAAAAATACCTAGTTACTGGATTTTTATGCACTACCTAAGTCTATTCAAGTATCCATTCGAGTGCCTTATGATAAATGAGTATGGAGGTGAGCAAGGGAAAAGTAGATGCATAGAGGTTAACAACAGTGGTGAATGCATATTATATGGAGTTGAGTTCTTAAAACAACAGGGTCTCAAAGAGTCACACAAGTGGTTCAATTTGGCTTTAATGTTAAGCTTCATAATAGGATATAGAGTGCTTaactttataattctttggtCTAGATGTTacaaaagtagaaaataa 1860 0.3817 MHTNTTMASSFNPISGNRKTSYRLETKNLSYRLCSQLDELRTLCFGSNPRRGSKFILKDVNCEARPGEVTAIAGPSGAGKTTLLEILAGRIPSCKVSGQVLVNHMPMDVNRFRRESGYVTQEDALFPSLTVRETLMYSALLRLPEGRKAAAMRVAELMKELGLDTIADSRIGNGSDHGISGGEKRRVSIGVDLVHDPSIILIDEPTSGLDSASALKVISLLRLMAFNQGKTVVLTIHQPGFRILELLDSLILLSDGFVMHNGSLNLLEARLNLSGHRIPNHVNVLEFALDAMQTLVIHTSESGNNQFPINDKNHQDHKMMMQCSMIVKEKAISYSNSPMEEILILGQRFCSNIFRTKQLFVTRVIQALVAGFVLGTIFLNVGNKQSKVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSRGAYRVSSYVLANTLVFLPFLLMVGLLYTTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGSSVIAGLMGSFFLFSGYFISKEKIPSYWIFMHYLSLFKYPFECLMINEYGGEQGKSRCIEVNNSGECILYGVEFLKQQGLKESHKWFNLALMLSFIIGYRVLNFIILWSRCYKSRK 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04312 619 Pfam ABC transporter 57 207 IPR003439 GO:0005524
Tsu02g04312 619 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524
Tsu02g04312 619 SMART AAA_5 66 257 IPR003593 -
Tsu02g04312 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 270 IPR027417 -
Tsu02g04312 619 Gene3D - 18 280 IPR027417 -
Tsu02g04312 619 Pfam ABC-2 type transporter 341 552 IPR013525 GO:0016020|GO:0140359
Tsu02g04312 619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 280 IPR003439 GO:0005524
Tsu02g04312 619 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 611 - -
Tsu02g04312 619 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 12 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04312 Tsu-Chr2 51562245 51564252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04312 37 267 Calmodulin-binding Proteins AT2G36910 28.571 2.95e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04312 K05681 - gmx:100776372 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04312 02 51562245 51564252 Tsu02g04312 02 51562245 51564252 ECH