Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04306 ATGGAACATTTATGTGATGATAACTTTGAAGGATCTCACGAAGAACGACAGATTTTTACAGAGGTCTTTTTTGGAGGTGATACTTTTCAGTCTAGTCAGAGGTGTGTTGTTTCTGGAGCCATCAACCTTGAACATGAATCcactaaaaacacatttaaatcAGTTGGCTCTAGTAATGAAAACTCAGGCATATTACGTCCCTCGTCTTCCAGATTTACACATCCTGAGGAGGACATTAATCTAATTCAGCATTCTAATGAAACTGCTCTGGGGTGTTTGCCAGAGAGTTTAAATTGTGAAGACCAGAATGATGAGGATGTAAATGTCAAACGTATGAAGTTTTCTCTGCATGAACTTCCTTGTAGTAGATCTAATTCAGAAGATGTTTTGGGTTCATCTGGAATTCAAAAAGTAGTAATTTCCAACCTGCCTAGTGCTGCTACAAACTTTGATATTGACCCAATTGCATTTCGTACGGTTGAATCATCTAAACACGGTGTGATATCTAGTTGCTGTCTATTGAAGCATAACTTGGTACATAATAAACATGCTTCTAATAATGTTGTAGATGTTACAAATTGTAAATCTAAAACAGCAGATGAGAACATTGTAAAAGAGATCTCTGTAACTAAGGTAGTTGCTTCTCCTGTATCCCAGGAGAGCTCGGCAAACAGGCTAATTGTAACGAGTCCACCAATCACTGTTGTGAAGAACTCTGAGTCTCCTTTAAAAAGTGAGGAAATGCCGGAAGAGTTTCAATCTTCTAATATGGTTATCTCAAAATCATTGTCAAAGCCAGGCAAAGAGGATCCCCGTCCCTTACTGCAGTTTCATATTGTGCAGTTGCTTACGATGTTAGGATGGTCTATTGGTAAGCATCTACGGCCTTGTAGGCGGTGGATGGAGTCAGTCTACACGACACCAACTGGAAAAATTATTCGGGAATTTACAAAAGTTTGGAGGTTATGTGGCCAACAGTTGTCTGTTGAAAAATACAATATACCATATGGGGGCCGTAAGGAATGGACCGATATTAGTGATTTCTGGTCTGATCTTTCGAGTGCACtgacaaatgttgaaaaatcaAAAACCCAGCCAGAAACCGCTGCTATGTTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTAGtagttatatattttgatagaaAGGTCGGTGCTCTGAAAAGGGGAGAGTTAATAAAAGCATCTTGtagtttagtttttaaaaagtataaaaggGCATATGCTCGTTCTCGTGCTCATTCTGATCAAAAGCACGCCCAAGCCATTTTCTGCGATTCTTCAACAGCCACCAGAACCACAGAAACATCTGCTTTTGTGATAAACAATCATGCCTGTAATCAGAAATCTGATGGTAATCAAGAAGATGTGTATGTCGGAGAACATAAACCAAACATCATAGAAAATCGCTGTAGTGAAATGTCAGTGGGCAAAAGTAGTATGGATCTAGTCTCCTTACCTGCATTGGGTAGCACTGTTACCCAATCAAGTGCTTCGTCATTCAATGTTCTTACAAGCTCTGGAAATTTGGAGTTGGAATCTAAAGTGAACGCTGTTAATCATGCTAAACTTAGTAATTCCAAAAGCTTTGATAAGCACACATCAGAAAATCAGTCTGAATGCAGTGAGGAAGAGGGGAGGAAGATCTCAATGGCTTCTGTATTTGGGAAAGATAGTACATGGTCCTCCTATGATGGTattcttaaaaagaaaatgcgGAGGAAGTGCAAAAGGATATCTCAAATCAAACCGAGTATGTTATACCATAGTGACATACTGGGATCAACTATTACTGACCAGGCGCAGTCGCTGAATGGTGATGTATGTGGCACTCAGGCTGGGTTGGAAGAAGTTCAGGATTATGTAGTTGACAGTGTGGGGAAAAAAAGGAACCACAGGCAGTTGACGGGTAGTGCAAACAAGcgaattattgaaaaaaagaagtCCAAAAGATGCCATATTGAAGATGATGATCTATTAGTGTCAGCAATATTCAAGAATAAGGACTTCAACCCAAAGAAAGTCCGATGTAATTCTAGAGCTAAATCCGGCAAATCAAAGGGTTTGAGAAAGCTTAAAAGCAATAAAGGCCGTTGCAGGTTGCTACCAAAGAACCCTTGTAATGGAGGGAAGCACAATAAGGATGGGAAGAAGTATTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGAGAATGGGgtcatatttttaaatgatgttATTCAATACCGAGATCCTAAAGATAATTCTGTCACTAAGGATGGTAAGATCACCAAAAATGGCATTGTTTGTAAGTGTTGTGGTATGGTGCTTACATTGTCAGAGTTCAAGACTCATGCTGGGTTTACCCTGAGTCGCCCTTGCTTGAATCTTTTCATGAAGTCTGGTGAGCCCTTTACACTTTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAACCAGGAAAAGTCAAAATCAAGCTGTGAATGTTGTTGATAATGACAGAAATGATGACTCGTGTGGGTTGTGTGGTGAGGGAGGTGAGCTGATATGTTGTGATAACTGTCCGTCTACTTACCACCTGGCTTGTTTGTCTGCTCAGGAGATCCCTGATGGCAACTGGTACTGCATAAACTGCACTTGTCGGATTTGTGGTAATTTGGTCATTGATAAAGAGGCTTCAGATACACATGATTCATTACAATGTTCACAATGCGAACATAAATATCACGAGAAATGCCTAGGAGAAGGAGATAAACAAGAAGGAGCAGTTTCAGACACTTGGTTTTGTAGTCAGAGTTGTCAGGAGGTATACTCCAGTCTCCAATCTCAGGTGGGGCTAGTTAATCAAGTCGCTGATGACTTCTCATGGACGCTTCTTAGATGCATACACGATGACCAAAAGGTTCATTCTGCCCAGTGGTTTGCCCTCAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAGTGTTTTGTGTCAATGTTAGATCTAAGAACAGGCATCCACATGTTACCCCAAGTTTTATACAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCGTGGTGCTGGAGAAACGGGATGTGTTAATATCTGTAGCATCTATCAGAGTGCATGGGACTTCAGTGGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGCCGCCAAGGAATGTGCCGACGCCTTGTGAGCTCAATCGAAGAGATGTTAATGTCTGTTAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCCGATCTGGTGGAGACATGGACCAAGGGCTTTGGTTTCGTACCTGTAGGTGACATTGAAAAGCAGAGATTAAAAAAACTCAACTTAATGGTTTTTCCTGGAACAGTATTACTTGAAAAACCCTTGTAtgggaagaagaaaaatgaagGGCTGTGTGATCAATTAACTTTAGCAGCAGATGATTTGTTCAAAGTAGATATCTGTTCCGAAGGAATGGCCATAGCCGAATCATTGCCGCAAGATGCTGGGAATGTAACTGCCATTAAAGTTGGTGCTAAGTCGGAGAATGAACCTATGGACTGCAAAAATCAACCAGACAATAGGGCTGATAGTGAAACCAACAGAGATGATAATACTCAAGCTGTTGAAATTGCATTAGGAGGCAAAGAATCAACAGAAACAAGTAGGTCTTTCAGTGAAGGGAAAATCACCCCTTTTGAAGGACACAGTGTGCAGGAATTGAGAACATGCAACAACATGCAAATTGAGAACTGTTGTGCTAACAAAGATGGTACTGAATCAGGTGTAAGACTTACCGAGGACAAGAATATCGAAATAGGTGAAGTTGAGGAAAATGCTTTGCACGAACGTGTTTCAAATGTGCCGTGCAAAACTTTTTCGGGCAACAATTTTGATGCCGTTTCTAATTTTGAATGCTCAGTGATGTATGATGAAACAGCTATTTTTGGTACATTAGCAAACTCTGCAAAATCAATGGAAAGTTAA 4014 0.3954 MEHLCDDNFEGSHEERQIFTEVFFGGDTFQSSQRCVVSGAINLEHESTKNTFKSVGSSNENSGILRPSSSRFTHPEEDINLIQHSNETALGCLPESLNCEDQNDEDVNVKRMKFSLHELPCSRSNSEDVLGSSGIQKVVISNLPSAATNFDIDPIAFRTVESSKHGVISSCCLLKHNLVHNKHASNNVVDVTNCKSKTADENIVKEISVTKVVASPVSQESSANRLIVTSPPITVVKNSESPLKSEEMPEEFQSSNMVISKSLSKPGKEDPRPLLQFHIVQLLTMLGWSIGKHLRPCRRWMESVYTTPTGKIIREFTKVWRLCGQQLSVEKYNIPYGGRKEWTDISDFWSDLSSALTNVEKSKTQPETAAMLAYQWWLLDPFVVVIYFDRKVGALKRGELIKASCSLVFKKYKRAYARSRAHSDQKHAQAIFCDSSTATRTTETSAFVINNHACNQKSDGNQEDVYVGEHKPNIIENRCSEMSVGKSSMDLVSLPALGSTVTQSSASSFNVLTSSGNLELESKVNAVNHAKLSNSKSFDKHTSENQSECSEEEGRKISMASVFGKDSTWSSYDGILKKKMRRKCKRISQIKPSMLYHSDILGSTITDQAQSLNGDVCGTQAGLEEVQDYVVDSVGKKRNHRQLTGSANKRIIEKKKSKRCHIEDDDLLVSAIFKNKDFNPKKVRCNSRAKSGKSKGLRKLKSNKGRCRLLPKNPCNGGKHNKDGKKYYLGERTLLSWLIENGVIFLNDVIQYRDPKDNSVTKDGKITKNGIVCKCCGMVLTLSEFKTHAGFTLSRPCLNLFMKSGEPFTLCLLQAWSAEYKTRKSQNQAVNVVDNDRNDDSCGLCGEGGELICCDNCPSTYHLACLSAQEIPDGNWYCINCTCRICGNLVIDKEASDTHDSLQCSQCEHKYHEKCLGEGDKQEGAVSDTWFCSQSCQEVYSSLQSQVGLVNQVADDFSWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDLRTGIHMLPQVLYNWGSDFARLNFQGFYTVVLEKRDVLISVASIRVHGTSVAEMPLIATCSRYRRQGMCRRLVSSIEEMLMSVKVEKLVVSAIPDLVETWTKGFGFVPVGDIEKQRLKKLNLMVFPGTVLLEKPLYGKKKNEGLCDQLTLAADDLFKVDICSEGMAIAESLPQDAGNVTAIKVGAKSENEPMDCKNQPDNRADSETNRDDNTQAVEIALGGKESTETSRSFSEGKITPFEGHSVQELRTCNNMQIENCCANKDGTESGVRLTEDKNIEIGEVEENALHERVSNVPCKTFSGNNFDAVSNFECSVMYDETAIFGTLANSAKSMES 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04306 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 831 883 IPR013083 -
Tsu02g04306 1337 MobiDBLite consensus disorder prediction 51 69 - -
Tsu02g04306 1337 MobiDBLite consensus disorder prediction 1189 1214 - -
Tsu02g04306 1337 MobiDBLite consensus disorder prediction 51 71 - -
Tsu02g04306 1337 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 989 1139 IPR000182 GO:0016407
Tsu02g04306 1337 MobiDBLite consensus disorder prediction 1191 1213 - -
Tsu02g04306 1337 PANTHER PHD FINGER PROTEIN 12 2 1331 IPR042163 GO:0003714|GO:0045892
Tsu02g04306 1337 Pfam Tify domain binding domain 764 814 IPR032308 -
Tsu02g04306 1337 SUPERFAMILY FYVE/PHD zinc finger 882 933 IPR011011 -
Tsu02g04306 1337 Pfam PHD-finger 842 883 IPR019787 -
Tsu02g04306 1337 ProSiteProfiles Zinc finger PHD-type profile. 839 884 IPR019787 -
Tsu02g04306 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 884 941 IPR013083 -
Tsu02g04306 1337 PANTHER INCREASED DNA METHYLATION 1 2 1331 - -
Tsu02g04306 1337 CDD PHD2_CHD_II 841 881 - -
Tsu02g04306 1337 Gene3D - 985 1124 - -
Tsu02g04306 1337 SUPERFAMILY FYVE/PHD zinc finger 827 882 IPR011011 -
Tsu02g04306 1337 SMART PHD_3 841 882 IPR001965 -
Tsu02g04306 1337 SMART PHD_3 883 937 IPR001965 -
Tsu02g04306 1337 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 993 1115 IPR016181 -
Tsu02g04306 1337 CDD PHD_SF 882 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04306 Tsu-Chr2 51522741 51531427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04306 1 404 PHD Transcription Factor Family AT3G14980 31.873 5.62e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu02g04306 TDBD 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04306 - - mtr:MTR_2g078040 2183.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04306 02 51522741 51531427 Tsu02g04306 02 51522741 51531427 ECH