Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04302 atgtCACATTCACCAGAAAAACCCGAACCCGAACCGGAGTTAGAATCTTTTTCCGATCGGTTTCGTGAAACGGTGAGTTTAGAAGTAAATAAACCGGATTTCAGAGAACTCGATCTAGGTTCACCGGTTTCACCATTAAGGACACGTGGAGGACCGTCGGTGAGTAGTAGTTCAGGTTCTTCTGGATCTTTCTCTGGTCGAAATGGGTCAAATTCAAACCCGGTTTCTAAAAGATCCGATTCAGCACCGAATAATAATAACAGTAACTCCGGTGAACTTTCCGGTTCTAGTGAGAATAGTCCAACGGCGGAGAGATCTGGTGGGAATGTAAGAGGTTCTAAACCGGGTCATTCAAGATCCAATTCAGGATCCGGTTTGACTCCGTTGACACATTCGGGTCAAACTGTTAACTCTCCGCCCTTGAATGTTCTTCCTACCGGAAACATTTGTCCTTCCGGTAGGATCTTGAAGACTGGGATGATGACACCTAATCGGAGTTCAAGAAGTGATGTTCTTGGTTCTGGAACTGGGAACTATGGTCATGGTAGCATAATGCGCGGTGGAGGAGGCGGCGGTGGTGCCGGAGTTGTTACTGGTAAAGGAGAGAGTAACAGTTTGAGAAGTAGCATTGGGGGTGATTTAGGAAAAAGAGGGGTGCAGGGTATGGATCCAGAAGAGCTTAAGAAAGCAGGAAATGAGCATTACAAAAAAGGTCATTTTTCAGATGCATTGAGTCTTTATGACCGTGCAATTTTGTTGTCGCCAACGAGTGCTTCTTATCGAAGCAACCGTGCTGCAGCGCTGACCGGTTTAGGGAGATTAGCTGAAGCTGTTAGGGAATGTCAAGAAGCTGTTAGATTGGATCCTAAGTATTCTAGAGCTCATCATCGTTTGGCTTCTCTTTACATCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCATCTATGTCAACCTGGATTGACGCCAGATCCGGCCGAGATGCAGAAGTTGAAAATGGTGGAAAAGCATATTAATAAATGTGCAGATGTTAGGAGAGTAGGAGATTGGAAAAGTGTTATCAGGGAACTTGATGCTGCTATTGCTGCTGGAGCCGATTCTTCTCCGCAGCTCTTTATGTGTAGAGCAGAAGCCCAATTGAAACTCCATCAAATTGATGATGCAGAATCAGTTTTGTCACATGTTCCGAAATCGGAGCCACGTGCTAATAATATATCTTCTCAAGCAAGATTTTTCGGGATGCTTTCTGAAGCTTATTCCTATTTTGTTAGAGCTCAAATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTCACGGCTGCTGAGAAGGCGAGTCAGATTGATTCGCGAAATGTTGAAGTTTCTGTTTTGCTTAACAATGTAAGGATGGTGGCAAGAGCTCGAGTTCGTGGCAATGATCTTTTTAAATCGGAACGGTTCACTGAAGCTTGCTCGGCATACGGGGAAGGTTTGAGATTGGACACTTCAAATTCTGTTCTATATTGCAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAAATCAATTGAAGACTCTAATCAAGCTTTACGTATCCAACCAAATTATACAAAAGCTCTTCTTCGAAGGGCTACATCATACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTTAAAGATTATGAGGTCTTGCGAAAAGAACTTCCAAATGACAATGCAGTTGCTGAAGCTCTTTTTCATGCACATGTTGCGCTAAAGAAATCTCGTGGAGAAGAAGTATCAAATTTAAAGTTCGGCGGTGAAGTGGAAGTAGTATCAGGTCTTGAGCAGTTTAGAACTGCAATATCTTTACCTGGTGTTTCTGTTGTCCATTTTGAAGTTGCATCAAATTCACAATGCAAGCAAATATCACCATTTGTGGATACACTATGTAGTCGATATCCTTCTATTAACTTCCTCAAGGTGGACATTCAAGAAAACCCGACAGTTGCAACTGCTGAGAACGTTAGAATCGTGCCAACCTTCAAGATATACAAAAACGGAAGCCGTGTGAAGGAAATCATATGCCCTAGTCGCGACATGTTGGAACACTCAGTGAGGCATTACAGCATTTAG 2094 0.4327 MSHSPEKPEPEPELESFSDRFRETVSLEVNKPDFRELDLGSPVSPLRTRGGPSVSSSSGSSGSFSGRNGSNSNPVSKRSDSAPNNNNSNSGELSGSSENSPTAERSGGNVRGSKPGHSRSNSGSGLTPLTHSGQTVNSPPLNVLPTGNICPSGRILKTGMMTPNRSSRSDVLGSGTGNYGHGSIMRGGGGGGGAGVVTGKGESNSLRSSIGGDLGKRGVQGMDPEELKKAGNEHYKKGHFSDALSLYDRAILLSPTSASYRSNRAAALTGLGRLAEAVRECQEAVRLDPKYSRAHHRLASLYIRLGQVENARKHLCQPGLTPDPAEMQKLKMVEKHINKCADVRRVGDWKSVIRELDAAIAAGADSSPQLFMCRAEAQLKLHQIDDAESVLSHVPKSEPRANNISSQARFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKASQIDSRNVEVSVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDTSNSVLYCNRAACWFKLGQWEKSIEDSNQALRIQPNYTKALLRRATSYSKLERWEEAVKDYEVLRKELPNDNAVAEALFHAHVALKKSRGEEVSNLKFGGEVEVVSGLEQFRTAISLPGVSVVHFEVASNSQCKQISPFVDTLCSRYPSINFLKVDIQENPTVATAENVRIVPTFKIYKNGSRVKEIICPSRDMLEHSVRHYSI 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04302 697 Pfam Tetratricopeptide repeat 293 315 IPR019734 GO:0005515
Tsu02g04302 697 Pfam Tetratricopeptide repeat 418 448 IPR019734 GO:0005515
Tsu02g04302 697 ProSiteProfiles TPR repeat profile. 224 257 IPR019734 GO:0005515
Tsu02g04302 697 MobiDBLite consensus disorder prediction 1 35 - -
Tsu02g04302 697 SMART tpr_5 417 450 IPR019734 GO:0005515
Tsu02g04302 697 SMART tpr_5 531 564 IPR019734 GO:0005515
Tsu02g04302 697 SMART tpr_5 224 257 IPR019734 GO:0005515
Tsu02g04302 697 SMART tpr_5 258 291 IPR019734 GO:0005515
Tsu02g04302 697 SMART tpr_5 463 496 IPR019734 GO:0005515
Tsu02g04302 697 SMART tpr_5 497 530 IPR019734 GO:0005515
Tsu02g04302 697 MobiDBLite consensus disorder prediction 48 145 - -
Tsu02g04302 697 MobiDBLite consensus disorder prediction 1 148 - -
Tsu02g04302 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 18 695 IPR044534 -
Tsu02g04302 697 SUPERFAMILY HCP-like 225 559 - -
Tsu02g04302 697 MobiDBLite consensus disorder prediction 182 220 - -
Tsu02g04302 697 Gene3D Tetratricopeptide repeat domain 222 583 IPR011990 GO:0005515
Tsu02g04302 697 Gene3D Glutaredoxin 590 696 - -
Tsu02g04302 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 18 695 - -
Tsu02g04302 697 ProSiteProfiles TPR repeat profile. 497 530 IPR019734 GO:0005515
Tsu02g04302 697 Pfam Tetratricopeptide repeat 533 563 IPR019734 GO:0005515
Tsu02g04302 697 CDD TRX_family 602 689 - -
Tsu02g04302 697 Pfam Thioredoxin 602 685 IPR013766 -
Tsu02g04302 697 SUPERFAMILY Thioredoxin-like 500 695 IPR036249 -
Tsu02g04302 697 Pfam Tetratricopeptide repeat 230 291 - -
Tsu02g04302 697 SUPERFAMILY TPR-like 332 460 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04302 Tsu-Chr2 51448236 51452295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04302 462 607 U-box Gene Family AT3G07370 29.508 1.37e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04302 - - gmx:100795358 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04302 02 51448236 51452295 Tsu02g04302 02 51448236 51452295 ECH