Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04283 ATGGACAAACATTCTGGGGATTCTTTGCCAGTTCATGGTGCTGCAGGGCTGTCTGGGATTTCTTCGCTTAATATTCCGAATAAAGTGGGAAGTGGTGCATGGAGAATACCGCACACAACTGATGTATTTCACGATTCAAATGATGTTAGCTTGTTTTCTACTTCGCTGCCTGTTCTTCCACATGAAAAATTAAATTTAACTGATTCTGAACAAGATTCTGAACAATATGGTCAACCGGTGGATGATAACTTGCTAACATTAGGAAATGTTCACAAAGAGGATGAAGGACATGATCcttttgatgatgattttgaaacCAGCGCCATTGGAAACATGCTTCCAGATGATGAAGACGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTAGTAGGTTAccaaatcaacttgaggatttggATGAAAATGATCTATTTGTTAATGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGTCTTAGTTTTGGAATTCCAAAGATGAGCATATCCGATGGGATTTCTTCAAATGGTATTGGACCTTATGCAATCCCGAATGGTGTGGCAACAGTAGCTGGGGAGCATCCGTACGGTGAGCATCCATCCAGGACATTGTTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTAAGAACTCTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCCTGAGACGAAGAAAACTTgatattcatttttcaattccTAAGGATAACCCCTCGGAAAAAGATATAAACCAAGGAACTCTCGTAGTGTTCAATTTAGATCCATCAGTATCAAATGATGACCTTCGCCAAATATTTGGAGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAGTTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTGAATCGAAGTGACATTGCTGGCAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGAGCACGCAGAAACTTGATGCAACAACTGACTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGGAGTCAAGTGGGTTCACCTATAGCCCATTCTCCCCCAGGTAGCTGGGCGCAATTTAGTAGTCCTGTTGAACCTAATCCATTAGGTTCTTATAGCAAGTCCCCTGGTTTGGGTCAGGCCAGCCCTATAAGTACCAACCATTTATCTGGATTGGCTGCGATTCTTTCCCCGCATGCATCAACATCTCCCAAAATTGCGCCTATTGGCAAGGACCCTGGAAGAGTTTCAAATCATATGTTTGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCCTATCCTGAACAAAAAGTAAATGCAAGTCCTAGGCCTATATCTGCTTTCGGCGAAACAAATTCAAGTTCATCGAGTGTTGGAACACTGTCTGGTCCCCAATTTCTTTGGGGAAGCCCGACTCCTTACTCGGAGCATTCAAACACATCTGCCTGGTCCGCATCTTCCCTTGGGCGTCCATTTACATCTAGTAGCCAAAGGCAGGGTTTCCCATACACAGCCACAGGTCATCACAATCCTTTTATTGGCTCCCAGCACCATCATCATGTAGGATCTGCTCCATCTGGCCTTCCATTTGAACGAAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCTCTCAAGAGCCCCATTGGATTTGGGAATTCAAATCACGGTGATGGGAATTTTATGATGAACATGGGTTCCCGTTCATCTGTCGGACATGGTCTTGGCCTTTCAGCAACTACCAGTGAAATTGGTTCACCTAATTTTGGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTCCTTGGAAATAGTTTGTATGCCGGACCAGGATTATCTAGCATTGAAGGATTTGCTGACCGTGGACGAAGTAGGCGACCTGACACTAATGTGAACCAAATTGAGAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCATCAGTGGTGAAGATACAAGGACTACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGGACTTATGATTTCCTCTACTTGCCAATTGACTTTAAAAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATCGTTGCCTTCTATAAGGCCTTTAACGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTAATGCATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTAGGCCGATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGTAATATTTGACTCAATTGCTTGA 2499 0.4166 MDKHSGDSLPVHGAAGLSGISSLNIPNKVGSGAWRIPHTTDVFHDSNDVSLFSTSLPVLPHEKLNLTDSEQDSEQYGQPVDDNLLTLGNVHKEDEGHDPFDDDFETSAIGNMLPDDEDELLAGIMDDFDLSRLPNQLEDLDENDLFVNGGGFEMDFEPQESLSFGIPKMSISDGISSNGIGPYAIPNGVATVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELEQDEARTFRSQVGSPIAHSPPGSWAQFSSPVEPNPLGSYSKSPGLGQASPISTNHLSGLAAILSPHASTSPKIAPIGKDPGRVSNHMFANSGSTQGVAFQHSISYPEQKVNASPRPISAFGETNSSSSSVGTLSGPQFLWGSPTPYSEHSNTSAWSASSLGRPFTSSSQRQGFPYTATGHHNPFIGSQHHHHVGSAPSGLPFERNFRYFPESPDASLKSPIGFGNSNHGDGNFMMNMGSRSSVGHGLGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGLSSIEGFADRGRSRRPDTNVNQIESKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQVIFDSIA 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04283 832 CDD RRM3_MEI2_like 706 791 IPR034454 -
Tsu02g04283 832 SUPERFAMILY RNA-binding domain, RBD 201 364 IPR035979 GO:0003676
Tsu02g04283 832 MobiDBLite consensus disorder prediction 554 574 - -
Tsu02g04283 832 Pfam RNA recognition motif 2 703 799 IPR007201 -
Tsu02g04283 832 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 277 IPR000504 GO:0003723
Tsu02g04283 832 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 828 - -
Tsu02g04283 832 CDD RRM1_MEI2_like 203 279 IPR034453 -
Tsu02g04283 832 SUPERFAMILY RNA-binding domain, RBD 705 790 IPR035979 GO:0003676
Tsu02g04283 832 Gene3D - 289 385 IPR012677 -
Tsu02g04283 832 MobiDBLite consensus disorder prediction 380 428 - -
Tsu02g04283 832 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 362 IPR000504 GO:0003723
Tsu02g04283 832 Gene3D - 192 288 IPR012677 -
Tsu02g04283 832 Gene3D - 697 792 IPR012677 -
Tsu02g04283 832 PANTHER PROTEIN MEI2-LIKE 2 14 828 - -
Tsu02g04283 832 SMART rrm1_1 205 273 IPR000504 GO:0003723
Tsu02g04283 832 SMART rrm1_1 290 358 IPR000504 GO:0003723
Tsu02g04283 832 SMART rrm1_1 705 781 IPR000504 GO:0003723
Tsu02g04283 832 CDD RRM2_MEI2_like 288 358 - -
Tsu02g04283 832 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 356 IPR000504 GO:0003723
Tsu02g04283 832 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 270 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04283 Tsu-Chr2 51061684 51067680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04283 199 512 Eukaryotic Initiation Factors Gene Family AT3G16380 24.069 8.16e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04283 - - gmx:100812324 1428.31