Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04269 atgaaggacTTTTGGAGCATAATATGTGGAAACCCTTGCTGTTATGATatcaagagtttgaaagatcCTTCTTCATGCAATAACCATTTGTTGGTAATTTTCTTTGATCTGATCATGCTGATGATGCTGTTATTTATGATGTTCCTGAAGTCTTCGTCGAGACCCTTTTGGAGTCGGGTAAGATATTCAAACTTGCAACTAGTTTCTGCCATAACCAATGCTTCCATTGGTTTGTTGCATTTATGTTTAGGAATTTGGATTTTAGAGGAGACATTAAGGAAAACCTACAAATCAGTTCCTCTTAATTGGTGGTTGCTAGAACTCTTTCATGGACTAACATGGTTGTTAGTAAGTTTAACTATAAGTCTCGAGATAAAACAACCTCCACGAGCATGGTTGTCGCTGTTTTCTATTCTCCTGTTCTTTGCTTCTGGTACATTATGTGTTTTATCCATGTCTTATGCAATTGGAAGACGAGAATTTTCCGTCAAGGAAGCTTTAGATGTTATATCTTTTCCAGGATCAACTTTTATGCTGTTATGTACTTACAAAGCATGTAAACGTGAAGATTGTGATGCAGACCGAGAAACTGCTGAAAGGCTTTATGCTCCCTTAAGTAGCGAGTTCAACAATGTTTCTCAATGTCATGTCACCCCATTTTCCGAAGCTGGATTCTTTAGTAAGATATCGTTTTGGTGGTTGAATCCATTGATTAAAAAGGGTCAAGAAAAAGCACTTCAAGACGAGGATATCCCAAAGTTAAGAGAGTCTGAACGAGCGGAAAGTTGTTATCTGTCATTTGTAGAACAATTAAGGATACAAAGAGAAAACGAACCATCATCACATTCATCGGTATTATGGACAATTATAATGTGCCACCGAAGAGAGATTTTGATAACAGGATTCTTTGCTTTGCTCAAGGTACTTGCTATATCTTGTGGCCCTCTACTTCTGAATGCTTTTATATTGGTTTCTGAGGGCAATGAAAGTTTCAAATATGAAGGATATATATTGGCCATATCACTCTTCTTCGTAAAGATCATAGAATCCCTATCACAAAGACAATGGTATTTTCGCAGTAGAATTGTTGGGATGAAAGTTAGGTCACTAATTACGGCAAAcgtttataaaaaaacattaaggtTATCCAATTCTGCTAGATTGGTTCACTCTAGCGGCGAGATAATGAATTATATGACTGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCATAGGACTTGGACAGCAATTCTCCAATTGTCTATTGCAATAATAATTCTTTTCCGCGCAATTGGAATAGCAACACTAGCATCGTTACTGGTCCTAGTTATAACCGTGTTTTGCAATGCTCCACTGGCAAAGTTGCATCACAAGTTTCACAGCAAacttatgatggcacaagatgAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAAGTGCTAAAGCTATATGCATGGGAAACTCATTTTAAAAATGCAATAGAAAAGTTAAGAAGTGCGGAACTCAAACTTCTATTTGCGGTGCTATTAAGAAAAACATATGCCGTCTTTCTCTTTTGGACCTCACCGGTTATGGTATCTACTGCATCTTTCCTAGCATGTTACTTGCTGAAAATTCCTTTGCATGCAAGTAATGTTTTCACTTTCGTAGCAACTTTACGCCTTGTTCAAGAGCTAATTACAGGCATCCCAGATGTTATTGCAGTAATCATTCAAGCAAAAGTTGCATTTGCTCGGATTCACAACTTTCTTGAGACACCAGAACTGCATAGTTCAAATTTCAATAGCAGTGACTTTAATGACAACCTCAAAGGCTCAGTTGTAATGAAATATGCAGACTTTTCATGGGAAGATAATGCATCAGAGCCAACACTAAGAAACATAAATTTGGATGTTAGACATGGGCAAAAGGTGGCTATTTGCGGAGAAGTTGGCTCAGGAAAATCAACCCTCTTAGCAACAATTCTTGGAGAAGTTCCGAATACAAAGGGAACGATTGATGTAtatgggaagtttgcatatgtTTCTCAAACAGCATGGATACAAACTGGTACAATACgggaaaatattttgtttggatCTGAGTTCGATGATCAAAGATTTCAAGAAACACTTCAAAGGTCTTCACTGATAAAGGACCTCGAGTTACTTCCCTATGGTGACCTCACCGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAACGAATTCAACTTGCCCGAGCTCTTTATGAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCAAAAAGTTTGTTTAATGAATACATCATGGAAGGACTCAAAGGAAAAACTGTCTTACTCGTTACTCATCAAGTTGACTTTCTCCCAGCATTTCATTCTGTTTTGTTAATGTCAGATGGGGTAATCCTACAAGCTGGTCCATATCACAACCTAATGACGGAAAGCCAAGAATTCCAAGACCTTGTCAATGCTCACAAGGTTACTGCCAGTTCAAACCAGCTCGTGAATGTTACTTGTTCTCATGCTTCTCGAAATATTTCTCAAGCTTTAGTGGAAAAGCAGTGTAAAGAAGCAAATGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGATAGGAGACACAGGGTTCAAGCCTTACTTACAATATCTGAATACGTTGAAAGGctatattttcttctccgtgTCTACATTCTGTCACATAGTTTTTGTGGTCTCTCAGATACTGCAAAACTCATGGATGGCTGCAAATGTCGACAATCCCCATGTCACAACGTTGAAattggtttttgtttatttctggATCGGAGCTTCTTCGATATTTTTCATGTTGATCAGAAGTCTATTTGTAGTTTCATTGGGTCTTCattcttcaaaatatttatttttaaagttgatGAACTCTCTCTTTCGAGCACCGATGTCTTTCTATGATTCTACGCCATTAGGAAGGATACTAAGTAGGGTCTCATCTGATCTGAGCATTCTGGATCTTGACATGCCATTTAGCCTCCTTTTTTCCGTCGGATCCGCTATAAACTTTTATGCTTGTCTTATAGTTTTATCAGTTGTCACTTGGCAAGTCTTGATTATTGTTATACCAATGGTATATGCTACAATTCGTTTACAGCAGAGATACTACTTAGTCTCGGAAAAACAAATGATGCGGATGAGCGGCACAACAAAATCCTATTTAGCTAATCATGTAGCTGAAACTATTGCTGGCGCTGTGACAATAAGGgcttttgaagaagaagatcgTTTTTTTAAGAAGAATCTTGATCTAATTGATATGAATGCAAGTACATTTTTCCACTGTTTTGCCTCAAATGAATGGTTGACGCAACGACTAGAAACAGTAAGCGCACTTGTTCTTTCCTCTGCAGCACTTTGCATGGTTATACTTCCACCAGGGACTTTCACCTCTGGATTTATCGGTCTAGCTCTATCTTATGGCCTTTCACTAAATGCTTCCTTAGTAATTTCAATTGGATTTCAATGTCGTCTCGCAGATAATATAATATCAGTAGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCAAAAGAAATAATAGAAGGTAATCGTCCTCCTTTGAATTGGCCAGTTGCAGGCAAAGTCGAAATAAATGACTTGAAGATACGATACAGACCCGATGGACCACTTGTACTACATGGGATCACATGCACATTTGAAGCTGGTCACAAGATTGGTATTGTTGGAAGAACAGGATGTGGGAAATCGACTCTTATTGGTGCTTTATTTCGTCTCGTGGAACCAGAAGGAGGAAAAGTTGTAGTTGATGGCATAGACATCTCGTCTATTGGTCTTCATGATTTGAGGTCGCGTTTTGGGATTATACCTCAGGATCCTACCCTTTTTAATGGAACAGTGAGATTTAATATGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTCGGGAAATGCCAACTACGAGAAGTTGTCCAAAAGAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGACGATGGATCAAACTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCTCTTTTAAGGAGAAGTAGGATATTGGTACTGGATGAAGCAACTGCATCAATCGACAACTCAACTGACTTGATTCTACAGAAAACCATTAGAACCGAGTTTGCGGATTGTACAGTTATCACAGTAGCACACAGGATACCGACTGTGATGGATTGCACTATGGTTCTTTCAATAAGCGATGGAAAATTGGCGGAGTATGATGAACCGATGAGCTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAGCTTGTTAAGGAATACTGGTCTCATTCTAAGTCTGCAGAATCGCATTGA 4398 0.3702 MKDFWSIICGNPCCYDIKSLKDPSSCNNHLLVIFFDLIMLMMLLFMMFLKSSSRPFWSRVRYSNLQLVSAITNASIGLLHLCLGIWILEETLRKTYKSVPLNWWLLELFHGLTWLLVSLTISLEIKQPPRAWLSLFSILLFFASGTLCVLSMSYAIGRREFSVKEALDVISFPGSTFMLLCTYKACKREDCDADRETAERLYAPLSSEFNNVSQCHVTPFSEAGFFSKISFWWLNPLIKKGQEKALQDEDIPKLRESERAESCYLSFVEQLRIQRENEPSSHSSVLWTIIMCHRREILITGFFALLKVLAISCGPLLLNAFILVSEGNESFKYEGYILAISLFFVKIIESLSQRQWYFRSRIVGMKVRSLITANVYKKTLRLSNSARLVHSSGEIMNYMTVDAYRIGEFPFWFHRTWTAILQLSIAIIILFRAIGIATLASLLVLVITVFCNAPLAKLHHKFHSKLMMAQDERLKASSEALVNMKVLKLYAWETHFKNAIEKLRSAELKLLFAVLLRKTYAVFLFWTSPVMVSTASFLACYLLKIPLHASNVFTFVATLRLVQELITGIPDVIAVIIQAKVAFARIHNFLETPELHSSNFNSSDFNDNLKGSVVMKYADFSWEDNASEPTLRNINLDVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIDVYGKFAYVSQTAWIQTGTIRENILFGSEFDDQRFQETLQRSSLIKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYENADIYLLDDPFSAVDAHTAKSLFNEYIMEGLKGKTVLLVTHQVDFLPAFHSVLLMSDGVILQAGPYHNLMTESQEFQDLVNAHKVTASSNQLVNVTCSHASRNISQALVEKQCKEANGNQLIKQEEREIGDTGFKPYLQYLNTLKGYIFFSVSTFCHIVFVVSQILQNSWMAANVDNPHVTTLKLVFVYFWIGASSIFFMLIRSLFVVSLGLHSSKYLFLKLMNSLFRAPMSFYDSTPLGRILSRVSSDLSILDLDMPFSLLFSVGSAINFYACLIVLSVVTWQVLIIVIPMVYATIRLQQRYYLVSEKQMMRMSGTTKSYLANHVAETIAGAVTIRAFEEEDRFFKKNLDLIDMNASTFFHCFASNEWLTQRLETVSALVLSSAALCMVILPPGTFTSGFIGLALSYGLSLNASLVISIGFQCRLADNIISVERLNQYMHIQSEAKEIIEGNRPPLNWPVAGKVEINDLKIRYRPDGPLVLHGITCTFEAGHKIGIVGRTGCGKSTLIGALFRLVEPEGGKVVVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRFNMDPLSQHTDQEIWEVLGKCQLREVVQKKEEGLNSSVVDDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLAEYDEPMSLMKREESLFRKLVKEYWSHSKSAESH 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04269 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 60 1465 - -
Tsu02g04269 1465 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 60 1465 - -
Tsu02g04269 1465 Pfam ABC transporter 631 765 IPR003439 GO:0005524
Tsu02g04269 1465 CDD ABCC_MRP_domain2 1217 1437 - -
Tsu02g04269 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1209 1452 IPR027417 -
Tsu02g04269 1465 Gene3D - 1203 1454 IPR027417 -
Tsu02g04269 1465 SUPERFAMILY ABC transporter transmembrane region 286 591 IPR036640 GO:0005524|GO:0016021
Tsu02g04269 1465 CDD ABCC_MRP_domain1 613 812 - -
Tsu02g04269 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 914 1182 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g04269 1465 ProSitePatterns ABC transporters family signature. 738 752 IPR017871 GO:0005524
Tsu02g04269 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 298 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g04269 1465 CDD ABC_6TM_ABCC_D1 299 586 IPR044746 GO:0140359
Tsu02g04269 1465 Gene3D - 611 844 IPR027417 -
Tsu02g04269 1465 SMART AAA_5 640 819 IPR003593 -
Tsu02g04269 1465 SMART AAA_5 1245 1428 IPR003593 -
Tsu02g04269 1465 Gene3D ABC transporter type 1, transmembrane domain 270 595 IPR036640 GO:0005524|GO:0016021
Tsu02g04269 1465 Gene3D ABC transporter type 1, transmembrane domain 865 1201 IPR036640 GO:0005524|GO:0016021
Tsu02g04269 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 836 IPR027417 -
Tsu02g04269 1465 Pfam ABC transporter 1236 1384 IPR003439 GO:0005524
Tsu02g04269 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1219 1453 IPR003439 GO:0005524
Tsu02g04269 1465 SUPERFAMILY ABC transporter transmembrane region 904 1199 IPR036640 GO:0005524|GO:0016021
Tsu02g04269 1465 CDD ABC_6TM_ABCC_D2 900 1194 IPR044726 GO:0140359
Tsu02g04269 1465 Pfam ABC transporter transmembrane region 904 1142 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g04269 1465 Pfam ABC transporter transmembrane region 298 555 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g04269 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 836 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04269 Tsu-Chr2 50773911 50779584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04269 564 856 Calmodulin-binding Proteins AT2G36910 29.167 1.31e-29 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04269 K05666 - gmx:100787314 2174.05