Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04267 ATGGCTGATGGTAGAGGTCCACCCAGAAGGATTAGAGTTAGAAGAAATGACCCACATCGAGAATTGCGTTTGGACATTGAACGAATGACTTATGAGGAGCTTCTCGCATTGGGTGAGAGGATTGGCAGAGTAAACACCGGTGCATCGGAAGAAATAATTACTTCTCAACTCAAAACAAAGTTATACACTCCAAATTACCCTATTGTTGATTTGAATGAGTTGCCCCcggatgatgatgaagaaacaaACACTTGTATAATATGTCAGGAAGAATTCAAGTTTCAAGAGAATATTGGAACAGTTCAATGTGGACATGAGTTTCATGTTGATTGCATTTCAAAATGGCTGAAGATGAAAAATGAGTGTCCTATATGCAAACTAAAAGCTGTAACTCCAAAAAAAGATTGA 408 0.3627 MADGRGPPRRIRVRRNDPHRELRLDIERMTYEELLALGERIGRVNTGASEEIITSQLKTKLYTPNYPIVDLNELPPDDDEETNTCIICQEEFKFQENIGTVQCGHEFHVDCISKWLKMKNECPICKLKAVTPKKD 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04267 135 SMART ring_2 85 125 IPR001841 -
Tsu02g04267 135 Pfam Ring finger domain 83 126 IPR001841 -
Tsu02g04267 135 ProSiteProfiles Zinc finger RING-type profile. 85 126 IPR001841 -
Tsu02g04267 135 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 17 133 - -
Tsu02g04267 135 SUPERFAMILY RING/U-box 73 131 - -
Tsu02g04267 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 130 IPR013083 -
Tsu02g04267 135 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 17 133 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04267 Tsu-Chr2 50730864 50731755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04267 16 132 C3H Transcription Factor Family AT2G15530 51.261 7.39e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04267 K19041 - gmx:100779069 149.828