Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04263 ATGATGAAGAGGAACACTATGAGCACAAGTTTGAAAggctatcatcatcatcatactTATTACAACAACAATCCAATCATCACAAACAAAAGTCCTTCTCATAGTAATAATGGATCATCATCAGAAGATTATATGAATGGATTTCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAGTTCAAATCAGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCAAGGCTTAGACAATCATCACCACCAACTCATGAAGTTCAAACCCATGCAACTCAAGGTTCTTCTATGCTTAACCTTAATAACCCTACTAACCCTAACTTTTTCTCAaactcatcttcatcatcaccattatcatcatcttcatctttagCAACAAATCTCAAACCTATTACTTGCACTTTACCTTTGTTTGTTGTGGATGGTATTTTGTTGAACCCTACTTTAAGCACAATGACCAAAGAGCCCctaagaaaatcaaatatggAACAATATGATGATTTAGTTTATGATGATGGATGTAGAATGATGAAGAAGGGTGAGATTCTAAGGATGGATTTGGAAATAGGTTTGCCAGGAGATTATGATGATAATTTGGATCTTGAGCTTCGTTTGGGTACTACTACTTACTCTAATTAA 660 0.3152 MMKRNTMSTSLKGYHHHHTYYNNNPIITNKSPSHSNNGSSSEDYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHEVQTHATQGSSMLNLNNPTNPNFFSNSSSSSPLSSSSSLATNLKPITCTLPLFVVDGILLNPTLSTMTKEPLRKSNMEQYDDLVYDDGCRMMKKGEILRMDLEIGLPGDYDDNLDLELRLGTTTYSN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04263 219 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 217 - -
Tsu02g04263 219 MobiDBLite consensus disorder prediction 24 45 - -
Tsu02g04263 219 Gene3D Classic Zinc Finger 51 110 - -
Tsu02g04263 219 SMART c2h2final6 55 77 IPR013087 -
Tsu02g04263 219 PANTHER OS07G0101800 PROTEIN 3 217 - -
Tsu02g04263 219 MobiDBLite consensus disorder prediction 88 128 - -
Tsu02g04263 219 Pfam C2H2-type zinc finger 55 79 - -
Tsu02g04263 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Tsu02g04263 219 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Tsu02g04263 219 MobiDBLite consensus disorder prediction 82 128 - -
Tsu02g04263 219 MobiDBLite consensus disorder prediction 24 44 - -
Tsu02g04263 219 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04263 Tsu-Chr2 50679531 50680190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04263 36 213 C2H2 Transcription Factor Family AT3G23130 37.097 3.89e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g04263 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04263 - - gmx:100781722 199.904