Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04233 ATGTCGCGGAAGGTTTTGATGGAACAAGACTTGAGTAAATTGGATGTGACAAAATTGCATCCACTTTCTCCCGAAGTCATATCTCGGCAGGCTACTATTAATATTGGCACCATCGGTCATGTGGCACACGGCAAGTCAACAGTTGTGAAAGCAATATCGGGTGTTCAGACCGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTCGGTTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGATGTCCAAGGCCTATGTCCTACAAGGCTTATGGAAGTGGAAAAGAAGATAATCCTATGTGTGATGTGCCAGGGTTTGAAAACTGCAAGATGAAATTGCTGAGACATGTTTCTTTTGTCGATTGCCCAGGTCATGATATTCTCATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTGCTACTCATAGCTGCTAATGAAAGCTGTCCACAACCACAAACCTCTGAGCATTTAGCTGCTGTAGAAATTATGCGTCTTCAACACATCATAATTCTTCAGAACAAGGTTGATCTAATTCAAGAGAATGTGGCCACCAATCAGCATGAAGCAATTCAGAAGTTTATAGAAGGAACGGTTGCTGATGGTGCACCAATCGTACCTATTTCAGCCCAATTGAAGTATAATATTGATGTTGTGTGCGAGTATATCGTGAAAAAGATCCCAATCCCCGAAAGGAACTTTATTTCTCCACCTAATATGATAGTAATTCGGTCCTTTGATGTCAATAAACCTGGTTTTGAGGTTGATGATATAAAAGGGGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTCAACCAATTCATTGAAGTTCGACCTGGGATagttgaagACGAGAGCGGAAATATTAAATGCACACCTATATACTCTAGAATAGTTTCATTGTTTGCTGAAGAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTAATTGGTGTTGGAACAACAATGGATCCCACTTTGACAGGATCAATGTCAACAGGAGCGAGAGTAATTGCTGTGAGGAACGACTTGGCAAAATTGCAACTTACATCTCCTGTGTGCACTAGCAAAGGCGAGAAGATTGCACTCAGTCGACGTGTTGAGAAGCACTGGCGTCTTATTGGGTGGGGTCAAATCCAAGCTGGAATCACTCTTGAAGTCCCTCCTGCACCCATCTTGAGTTGA 1218 0.4212 MSRKVLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMSYKAYGSGKEDNPMCDVPGFENCKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVATNQHEAIQKFIEGTVADGAPIVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMIVIRSFDVNKPGFEVDDIKGGVAGGSILRGVLKVNQFIEVRPGIVEDESGNIKCTPIYSRIVSLFAEENELQFAVPGGLIGVGTTMDPTLTGSMSTGARVIAVRNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLEVPPAPILS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04233 405 Pfam Initiation factor eIF2 gamma, C terminal 340 390 IPR015256 -
Tsu02g04233 405 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 339 391 IPR009001 -
Tsu02g04233 405 CDD eIF2_gamma_II 241 339 IPR044127 GO:0000049
Tsu02g04233 405 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Tsu02g04233 405 SUPERFAMILY Translation proteins 240 341 IPR009000 -
Tsu02g04233 405 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Tsu02g04233 405 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Tsu02g04233 405 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Tsu02g04233 405 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Tsu02g04233 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 236 IPR027417 -
Tsu02g04233 405 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Tsu02g04233 405 Gene3D Translation factors 243 355 - -
Tsu02g04233 405 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 339 - -
Tsu02g04233 405 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Tsu02g04233 405 Pfam Elongation factor Tu domain 2 268 339 IPR004161 GO:0005525
Tsu02g04233 405 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 340 402 - -
Tsu02g04233 405 Gene3D - 30 240 IPR027417 -
Tsu02g04233 405 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 340 402 - -
Tsu02g04233 405 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04233 Tsu-Chr2 50267316 50271970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04233 1 403 Eukaryotic Initiation Factors Gene Family AT1G04170 73.333 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04233 K03242 - aof:109842850 677.552