Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04220 ATGGAGAATCAACATCCTTCAAATTGTAGAAAGCAAATTATGGAACAAGAGTTAATTAGAGGACGTGACACAGCAAATCAATTACTTGAAGTAATTGTGAACAAATTGAATATTAATCTTCATCACAATGGAGATTTAGAAGGGTTAATATTACCCTTAACTCAAGATCTTGTAAAAAAGGTACTTAGATCATTCACAAATACACTTTTTCTATTGAACACTAACAATGATGTCTTTAGTGATGAGGAAGTGCTGCCTATTACTATCAAAGATTTGTCATCACCAGCAAAGTGTCCAAAGCTTGAAGAAACAGATCATGAAGCTTGCAAAAGTTATAAACTTCAAAGAGGGTGCTACAAAAGAAAACCAAACACACTTATTTGGGAGAAGGATAGCTCAATTTTGATTGAAGATGGCTATGAATGGAGAAAGTACGGACAAAAAAAGATAAgcaatgcaaaatatatcaGGAGCTACTACAGATGCAGTTACAAAAGTGAACAAGATTGTGCAGCTATGAAACAAGTACAGAGAATTCAAGAGGATCCTCCATTGTACAGAACCACATATTATGGCCATCATAATTGCAAAACCTCTTCATCAAATTCAGATATCACATTTTTGGAACCTAATAATACTTCATCTATGATCATTAACTTCAATGATAGCTTCCAAACCAAAGAACAATACCCTTCATTTTCAACATCACTTTCTGCATCCACAAAACAAGAGCCTATAGATCAAGTGATTAATCCCTATCATAATCACATTGCTCACAACCAATTAATCTCATCAGATTATTACCCTCTCTCATGTGATTATGAACTTGAATTTGATTATTTGAGACATGCTACTATGCTATCATCCACCCAATCTGTTGATTTTCATGATGTTTATGAGCCATGCATGCAGTTTGGATTTTGA 924 0.3333 MENQHPSNCRKQIMEQELIRGRDTANQLLEVIVNKLNINLHHNGDLEGLILPLTQDLVKKVLRSFTNTLFLLNTNNDVFSDEEVLPITIKDLSSPAKCPKLEETDHEACKSYKLQRGCYKRKPNTLIWEKDSSILIEDGYEWRKYGQKKISNAKYIRSYYRCSYKSEQDCAAMKQVQRIQEDPPLYRTTYYGHHNCKTSSSNSDITFLEPNNTSSMIINFNDSFQTKEQYPSFSTSLSASTKQEPIDQVINPYHNHIAHNQLISSDYYPLSCDYELEFDYLRHATMLSSTQSVDFHDVYEPCMQFGF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04220 307 ProSiteProfiles WRKY domain profile. 131 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g04220 307 SMART WRKY_cls 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g04220 307 Pfam WRKY DNA -binding domain 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g04220 307 Gene3D WRKY domain 123 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu02g04220 307 SUPERFAMILY WRKY DNA-binding domain 132 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu02g04220 307 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 297 - -
Tsu02g04220 307 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 297 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04220 Tsu-Chr2 50099075 50122692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04220 12 293 WRKY Transcription Factor Family AT3G56400 30.634 1.42e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu02g04220 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04220 - - gmx:102663141 315.849