Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04199 ATGGCACAGTTTCTTCCCTGCGATTCAGAAGGTATTTGCATGGTTTGCAAACACAAACCTCTTGAAACTGAAACTCTTGTTTGCAGAACTTGCGTAACTCCATGGCATGTTCCATGTCTACCTCTTGTTCCAACTACAATTCTTGATTGGGAATGTTCTGATTGTTCACAAACAATTGACAACAGCAACAACGGTGTAGGCGACGTACCTGCTCCGCCTATTGCCGGAGATCTTGTTTCTGCGATTCGTGCCATCGAGAATGATACTTCGCTTACTGATCAAGAAAAGGCGAAGAAACGTCAAGAACTTGTTGGTGGTGGATGTTCTAAATCGACAGGTGAAACTAACAACAGTTTGCTCGATGGCAGAGTTAACTGCTCCTTTTGCATGCAGTTGCCTGAGAGACCCGTCACTacACCATGTGCAcacaatttttgtttgaaatgtTTTGAGAAATGGATCAAGCAAGGAAAACGAACTTGTGCGAATTGTAGGGCTGCAATTCCAGCGAAGATGGCGACTAATCCGCGAATTAACGCACAGTTGGCGACCGGGATTCGTTTGGAAAAGCTCGCAAAATCGAAGGGTGATGGGGGAAGCAGTGCTCCAAAAGTTTATCACACTGTTGACAACGATGAGCGTCCTGACACTGCTTTCACCACTGAGAGAGCAAAGAAAACTGGAAAGGCTAATGCCTGCAGTGGAAAAATCTTTGTGACAATTCCAAAAGATCATTTTGGACCGATTTCTGCTGAAAATGATCCAACAAGGAACCGTGGAGTTCTTGTTGGTGATACATGGGAGGATAGGATGGAATGTAGACAATGGGGTGCTCATTTTCCTCATGTTGCTGGGATTGCCGGTCAGAGTACTCATGGTGCTCAGTCTGTTGCTCTTTCCGGAGGTTACATTGACGACGAGGATCACGGTGAGTGGTTCCTTTACACCGGAAGTGGTGGAAGGGATCTTAGTGGCAACAAAAGGACCAACAAAAATCAGTCATTTGACCAGCAATTTGAGAACATGAATGAGGCTTTGAGACTCAGTTGTCGAAAAGGTTATCCTGTTCGTGTTGTCAGGTCTCACAAGGAGAAACGTTCCTCTTATGCACCGGAAGAAGGAGTGAGATATGATGGGGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCTCCATGGACAAGTGATTTATCCGGAGACCGTCCCCGGCCACTACCTATAATCGAGGAGTTTAAGGATGCAATTGATATTACTGAGAGAAAGGGTGATCCATCATGGGATTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCGGTTAACACTGTGGATCCTATAGATGGAAGTATAATAAAAGTTGTTAGGCCAAAGGCAAAAAAGGTGCCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAGTATATGTCACAAAGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCATAATTTCTGCAAAGCCTGCTTGGAGGGTACCTTTTCTGGCCAAAGTTATATCAGGACTAGAACAACTCAAAGCGGACGCTCTTTGCGGGCACAGAAGAACGTTATGAAATGCCCTACTTGCTCAACTGACATAGCTGATTATCTTCAGAATCCCCAGGTTAACAGGGAAATGATGGATATCATAGAATCACTCCAGCGACAGGCTGAACAGATGGAGGAGAGTTCTGAAGAATCAAGTGCTAAAAGTGAAGATGAATCAAGTGGTAAAAGTGATGAAAATCTCAAGTTGGATGAGGAGAAAGAGATTCCGAAGCCCTGTGATTCAAGTGAAAAAGTCTCGGAGGAAACTGAGAATGATGTGGATCCTCCACAGAAGCGGAGGAAAGGTACTGATGGCAAGGCTGTGGTGAATGCGGAGGAACATACTGATGAGGCGGTAGTAGAAACAATGTAA 2010 0.4423 MAQFLPCDSEGICMVCKHKPLETETLVCRTCVTPWHVPCLPLVPTTILDWECSDCSQTIDNSNNGVGDVPAPPIAGDLVSAIRAIENDTSLTDQEKAKKRQELVGGGCSKSTGETNNSLLDGRVNCSFCMQLPERPVTTPCAHNFCLKCFEKWIKQGKRTCANCRAAIPAKMATNPRINAQLATGIRLEKLAKSKGDGGSSAPKVYHTVDNDERPDTAFTTERAKKTGKANACSGKIFVTIPKDHFGPISAENDPTRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPEEGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEAAPWTSDLSGDRPRPLPIIEEFKDAIDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNTVDPIDGSIIKVVRPKAKKVPFKIKDRLLKEFGCSICHKVLASPLTTPCAHNFCKACLEGTFSGQSYIRTRTTQSGRSLRAQKNVMKCPTCSTDIADYLQNPQVNREMMDIIESLQRQAEQMEESSEESSAKSEDESSGKSDENLKLDEEKEIPKPCDSSEKVSEETENDVDPPQKRRKGTDGKAVVNAEEHTDEAVVETM 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04199 669 Pfam SAD/SRA domain 259 407 IPR003105 -
Tsu02g04199 669 SMART ring_2 126 164 IPR001841 -
Tsu02g04199 669 SMART ring_2 502 559 IPR001841 -
Tsu02g04199 669 Gene3D - 227 422 IPR036987 -
Tsu02g04199 669 SUPERFAMILY FYVE/PHD zinc finger 6 58 IPR011011 -
Tsu02g04199 669 SUPERFAMILY RING/U-box 121 176 - -
Tsu02g04199 669 CDD RING-HC 126 164 - -
Tsu02g04199 669 MobiDBLite consensus disorder prediction 584 669 - -
Tsu02g04199 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 68 IPR013083 -
Tsu02g04199 669 SMART G9a_1 251 408 IPR003105 -
Tsu02g04199 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 490 613 IPR013083 -
Tsu02g04199 669 ProSiteProfiles YDG domain profile. 256 404 IPR003105 -
Tsu02g04199 669 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 5 660 - -
Tsu02g04199 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 193 IPR013083 -
Tsu02g04199 669 MobiDBLite consensus disorder prediction 588 669 - -
Tsu02g04199 669 Pfam Zinc finger, C3HC4 type (RING finger) 126 164 IPR018957 GO:0046872
Tsu02g04199 669 Pfam RING-type zinc-finger 502 543 IPR027370 -
Tsu02g04199 669 ProSiteProfiles Zinc finger RING-type profile. 502 560 IPR001841 -
Tsu02g04199 669 ProSitePatterns Zinc finger RING-type signature. 517 526 IPR017907 -
Tsu02g04199 669 ProSiteProfiles Zinc finger RING-type profile. 126 165 IPR001841 -
Tsu02g04199 669 SUPERFAMILY RING/U-box 494 585 - -
Tsu02g04199 669 Coils Coil 573 600 - -
Tsu02g04199 669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 660 IPR045134 -
Tsu02g04199 669 ProSitePatterns Zinc finger PHD-type signature. 13 55 IPR019786 -
Tsu02g04199 669 SUPERFAMILY PUA domain-like 230 425 IPR015947 -
Tsu02g04199 669 MobiDBLite consensus disorder prediction 193 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04199 Tsu-Chr2 49640611 49644190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04199 5 593 C2H2 Transcription Factor Family AT5G39550 61.111 0.0 738