Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04187 ATGAGCAGTTCTTCCCAATTTCTCTTCCTTTCACTAATTGTCATTTGGTTCATATCTGTATTGGCTTTTGGAGCTACTACTATTCACCCCGACGAAAAGAAAGCTCTTCAAGCTATAGCTGAATCACTTGGTAAGAATGATTGGAACTTCGACATAGATCCATGCAGCAACAAACCTAACTGGGCTACACCTAACCCTACGCCTCTCACTCCCAGATTGAGTATCGTAGAGAACAATGTCACCTGCAACTGCAGTGTTGCTGGTGACAACTTCTGTCATGTTGTTTCAATAACtttgaaaggacaaaatctcCCTGGCACTCTCCCACCAGAACTGAACAGGTTGCATTACCTTCAAATTATTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGCACCATGACAAATCTTCTTAACATTACTCTCCCATCAAATCGATTAACGGGTTCAATACCAGTGGAGATTGCAAATATATCTACTCTGATACAGTTGGAGTTAACGGCCAATCAAATGTCTGGAAATATTCCTCATGAGCTTGGGAATTGGACCCAGATTCGAACACTGCGACTTTCCTCTAACAATTTTACTGGAGAACTACCTGCAACACTGGCCAAGCTCACTACATTGCAATATTTCCACATTTCGGACAACCAATTCTCTGGAAAGATACCTGATTTTATTCAGAACTGGACAAATATCAATTCGCTATTCATTCAAGGGAGTGGATTAAGTGGGCCGATTCCTTctaaaatttcacttttgaGAAACTTAACTGACTTGAGAATTagtgatttgaatggatttgaaTATGCACCTTTGCCCCTATTTAATAATACGCCATTGTTAAAAAATCTGATTCTGAGGAACTGCAAAATCAACGGGAAACTGCATGATTATTTTGGGACTATAACAACATTAAAACGCTTAGACCTCAGCTTTAACAACATAAGTGGAACCATTCCAAGTACCTCTGCTGTCATGAACGATGTCAAATTCATATTTTTAACTGGAAACCTTCTCACTGGATCGTTACCTACTTGGAAAAAGGACATCGACGTTGATGTTTCATACAATAACTTAAGCATCAACCAAGGGAGTCAGATTTGTCAAAGTGGAAGATTGAACTTGTTTTCTCCGACATTGGCACACAATAACATTGGAACAGTTTCGTGTTTGAGAAAATGTCCCAAATACTCGTATTCCCTTCATATAAATTGTGGTGGAACGCAAGCAGCAGGCTATGATGATGATTCAGAGCCATCTGGAGCAGCTAAGTTCTATGTCAGTCCAACAGGAAAATGGGCATTTAGCACCACTGGTACATTCATTGATGGTGATCAACTTGGAGAAAATTATGAGCTCCTGCAAAATATCACCATACTTACTATGCCGGATGCTGAATTGTACATGAAAGCCCGTGGTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTTAAACTACATTTTGCTGAAATAATGTTCACTAATGATCAAACTTATGGCAGTCTCGGAAGACGTGTATTTGATATCTACCTTCAGGGAAAGAGGGTGCAGAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCATAAAACTGTTCAAAGATATTGTTGTTACTAGTAATACCTTGGAGATCCGCCTGTATTGGGCAGGAAAAGGGACACAATCTCTCCCAAATAGATCAGTATATGGTCCTCTTATATCAGCAATATCCGTGGAATCTGACTCTCCACCTGGAAGCATATCTTCAGGAGCTGTGGCTGGAATTGTGGTTGCAGCAACAGTTACTATCATTCTATTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGCAAGAGAGCTGGAGAGTTTAGACCTACAAACAGGTTTATTTACCTTAAAGCAAATCAAAGCAGCAACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTATACAAGGGATGTTTACCCAATGGGACATTCATAGCAGTCAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCGGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTATGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTAGCTCGAGCTTTATTTGGTCCAGAGGAACACCAAATAAGATTAGATTGGTCAACAAGGAAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTACTTGATGCGGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAATTGTTACCTTGGAAATCGTCTGTGGAAGGACCAACACCATTTATCGGTCAAAGAAGGAAGCACTCTATCTTCTTGAATGGGCACATATGTTGAAAGAGAAAGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAACGGAAGCTATGATAGTGATCAATGTGGCTCTTCTATGCACCAATTTCACTTCAAACCTTAGGCCGGCTATGTCGTCAGTGGTAAGTATGCTTGAAGGAAGGACTGTGGTTCCAGAATTTGTGCCAGATTCAAGTGAAGTAATGGATGAAAACAAGATGGAATTAATGAGGCAGTATTACTATGAGATGGAAGAAAGTAATACAAGTAAGTCACAAACACAAAGTCAGAGTTTATCGATTGATAGGCCATGGACTGCTTCATCTTCATCAGCTGTAGACCTTTATCCCGTCCAACTTGATTCTTCCTATTGGGAGGAACAAAAATTAAGAATGTGTTAA 3039 0.3893 MSSSSQFLFLSLIVIWFISVLAFGATTIHPDEKKALQAIAESLGKNDWNFDIDPCSNKPNWATPNPTPLTPRLSIVENNVTCNCSVAGDNFCHVVSITLKGQNLPGTLPPELNRLHYLQIIDLSRNYLNGTIPKEWGTMTNLLNITLPSNRLTGSIPVEIANISTLIQLELTANQMSGNIPHELGNWTQIRTLRLSSNNFTGELPATLAKLTTLQYFHISDNQFSGKIPDFIQNWTNINSLFIQGSGLSGPIPSKISLLRNLTDLRISDLNGFEYAPLPLFNNTPLLKNLILRNCKINGKLHDYFGTITTLKRLDLSFNNISGTIPSTSAVMNDVKFIFLTGNLLTGSLPTWKKDIDVDVSYNNLSINQGSQICQSGRLNLFSPTLAHNNIGTVSCLRKCPKYSYSLHINCGGTQAAGYDDDSEPSGAAKFYVSPTGKWAFSTTGTFIDGDQLGENYELLQNITILTMPDAELYMKARGSPISLTYYGFCLANGSYTVKLHFAEIMFTNDQTYGSLGRRVFDIYLQGKRVQKDFNIAEEAGGVGKKVIKLFKDIVVTSNTLEIRLYWAGKGTQSLPNRSVYGPLISAISVESDSPPGSISSGAVAGIVVAATVTIILLFGILWWKGCFGKKNSLARELESLDLQTGLFTLKQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTFIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCMEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDADLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVTLEIVCGRTNTIYRSKKEALYLLEWAHMLKEKGDLMELVDRRLGSDFNKTEAMIVINVALLCTNFTSNLRPAMSSVVSMLEGRTVVPEFVPDSSEVMDENKMELMRQYYYEMEESNTSKSQTQSQSLSIDRPWTASSSSAVDLYPVQLDSSYWEEQKLRMC 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04187 1012 Pfam Malectin domain 406 588 IPR021720 -
Tsu02g04187 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 385 975 - -
Tsu02g04187 1012 Gene3D - 403 593 - -
Tsu02g04187 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Tsu02g04187 1012 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 297 351 - -
Tsu02g04187 1012 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 81 299 - -
Tsu02g04187 1012 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 385 975 - -
Tsu02g04187 1012 SUPERFAMILY L domain-like 70 350 - -
Tsu02g04187 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 297 351 - -
Tsu02g04187 1012 ProSiteProfiles Protein kinase domain profile. 660 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04187 1012 Pfam Protein kinase domain 662 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04187 1012 Gene3D Transferase(Phosphotransferase) domain 1 736 941 - -
Tsu02g04187 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 81 299 - -
Tsu02g04187 1012 SUPERFAMILY Protein kinase-like (PK-like) 643 960 IPR011009 -
Tsu02g04187 1012 Gene3D Ribonuclease Inhibitor 205 272 IPR032675 -
Tsu02g04187 1012 SMART serkin_6 660 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04187 1012 CDD STKc_IRAK 666 933 - -
Tsu02g04187 1012 Gene3D Ribonuclease Inhibitor 31 204 IPR032675 -
Tsu02g04187 1012 Gene3D Ribonuclease Inhibitor 273 378 IPR032675 -
Tsu02g04187 1012 Gene3D Phosphorylase Kinase; domain 1 628 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04187 Tsu-Chr2 49385730 49394204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04187 20 975 Receptor kinase-like Gene Family AT1G53420 53.074 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g04187 Pkinase 7.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04187 - - gmx:732563 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04187 02 49385730 49394204 Tsu02g04187 02 49385730 49394204 ECH