Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04180 ATGAGCACTTCTTCCCAATTTCTCTTCCTTTCACTAATTGTCATTTGGTTCATATCTGTATTGGCTTTTGGAGCTACTACTATTCACCCTGACGAAAAGAAAGCTCTTGAAGCTATAGCTGAATCACTTGGTAAGAAGGATTGGAACTTCGACATAGATCCATGCAGCAACAAACCTAACTGGGCTACACCTAAGCCAACGCCTCTCACTCCCAGATTGAGTATCGTAGAGAACAATGTCACTTGCAATTGCAGTGTTGCTGGTGACAACTTCTGTCATGTTGTTTCAATAACTTTGAAAGGGCAAAATCTCCCTGGCACTCTCCCACCAGAACTGAGCAGATTGCATTACCTTCAAATTATTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGCTCCATGACAAATCTTCTTAACATTACTCTCCCCTCAAATCGATTAACGGGTTCAATACCAGTGGAGATTGCAAATATATCTACTCTGATACAGTTGGACTTAACGGCCAATCAAATATCTGATAATATTCCTCGCGAGCTTGGGAATTTGACCCAGATTCGAACACTGCGATTGTCCTCTAACAATTTTACTGGAGAGCTACCTGCAACATTGGCCAAGCTCACTGCATTGCTAGATTTCCAAATTTCTGACAACCACTTCTCTGGAAAGATACCTGATTTTATTCAAAACTGGACAAATATCAATTCGCTATCAATTCAAGGGAGTGGATTAAGTGGGCCAATTCCTTCTGAAATTTCACTTTTGAGAAACTTAACTGACGTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCACAATTTAATAATATGCCTTTGTTAAAAAATCTGATTCTGAGAAATTGCAAAATCAATGGGAAACTGCATGATTATCTTGGGACTATAACAACATTAAAACACTTAGACCTCAGCTTTAACAACATAAGTGGAACAATTCCGAGCACCTATGCTGAGACGAGCGGTGTGAAATTCATATTTTTAACTGGAAACCTTCTCACTGGATTGTTACCTCCTTGGAAAAAGAACATCGACgtAGATATTTCATACAATAACTTAAGCATCAGCCAAGGGAGTCAGATGTGTCAAAGTGATCAAGTTTTCTCACATGATCTTCTCAATCCAGCCTCGTACTCTCTTTATATAAATTGCGGTGGAAACCAAGCAACAGTCGAcggaataaattataattatgattCCGATTCATCTGGACCAGCTAAATTCCATGTTAGTCCAACTGGAAATTGGGCATTTAGCACCACTGGTATATTCATAGATGGTGATCAACTTGGAGAAACTTATCTCCCGCAAAATATCACTACACTTACTATGGCTGATTCTGAATTGTACACAAATGCACGTGGTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAACTGGAAGCTACACAGTGAAACTACATTTTGCTGAAATAATGTTCACAGATGATCAAACGTATGGTAGTCTTGGAAGGCGTGTATTTGATGTCTACCTTCAGGGAAATCTGGTGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCATAAAACAGTTCAAAGATGTTGATGTTACTAGTAATACCTTGGAAATCCGCCTGTATTGGGCTGGAAAAGGGACACAATCTCTCCCAAATAGATCTGTATATGGTCCACTTATATCAGCAATATCTGTGGAGTCTGCCTCTCCACCTGGAAGCATATCTACAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATTATCATTCTATTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACACATTAGCAAGAGACCTAGATAGTTTAGACCTACAGACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCGACAAATTACTTTGATATTTCCAATAAGATCGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTTAAACAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTACGGTTGCTGTATGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTAGCTCGTGCTTTATTCGGTCCAGAGGAACACCGAATAAAATTAGATTGGTCAACAAGGCAGAAGATTTGTGTTGGCATTGCTAAAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTACTAGATACGGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTGGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATCGTTGCCTTGGAGATCGTTAGTGGAAGGAGCAACACCATGCATCGGGCAAAGGAGGAAGCATTCTATATTCTTGATTGGgCACATTTGTTGAAGGAGAGAGGTGACCTAATGGAGCTAGTTGACGGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGATGATTAATGTGGGTCTTCTATGCACCAATGTAACTTCAACCCTTAGGCCCTCCATGTCATCAGTTGTAAGTATGCTCGAAGGAAGGACTGTTGTTCCAGAATTTGTTTCAGGTTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGCATTACCATCAGATTGGCGAAACTACGATAATACAAGTTATGAAAGACATAGGAAGAACACTTGGGAAGAAAGATTGGGACTTCAGCAAAGATCCATGTAGTGGAGAAAATAATTGGACATCTTCTGTAAAAGTGAAAGGGTTTGAAAATGCTGTCACTTGCAATTGCTATTTTGCCAATGCAACTATCTGCCATATTATTAGCATTGTTCTGAAGTCACAAAATCTTTCTGGCACACTTCCAAGTGAATTTGTGAAATTGCCTTATCTCCAACAAATTGATCTCACACGTAACTACCTTAACGGTACAATTCCACCACAATGGGGCTCCATGACCAATCTTGTCAACATTTCACTTTTAGGAAATCGATTAACTGGTCAAATTCCAAAAGAAATTGGAAAAATCACCACACTCAAAAGCTTGGTATTGGAGTTCAATCAATTATCTGGAAAGCTTCCTCCAGAGCTTGGGAATCTTCACCAACTTGAAAGACTGCTTCTTACCTCCAACAATTTTACTGGAAATTTACCTGCAACATTTTCTAAGCTCGCTAAATTGAAGCAAATTCGACTCGGCGACAATCAGTTCTCTGGAACATTACCTGATTTCGTTCAGAGTTGGACAGGTCTTGAAAGGCTCGTGATGCAAGGGAGTGGCTTGAGTGGCCCAGTTCCTTCTGGAATTTCATATCTGAAAAACCTCACGGACTTGAGAATAAGTGACTTGAAAGGACCAGATTCTCCTTTTCCGCAACTTATTAACTTGATGGTTCTGGAAACATTAGTACTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGCATATCTTGGAAATATTACCACTTTAAGATCATTAGACCTCAGTTTTAACAAATTAAGTGGACAGATACCGAACACCTTGGGCGTCCTCGAGAACATAAATATTCTATACTTAACTGGAAACCTTTTTACTGGACCACTGCCAAATTGGATAGCTAGACCAGACTACACAGATCTATCATATAACAACTTGAGCATTGAAAATCCAGAGCAGTTGACATGTCAACAAGGAACAGTGAACTTGTTTGCTTCATCTTCAAAGAGAAGTAACTTGGGAATGGTTTCATGTTTGGGGAACAATGGCTGTCCTAAAAAGTCGTACTCTCTCCATATCAATTGTGGCGGGAAGATCATAACTTCTAATAAAAGCTTGACATATGACGATGATTCAAATGAAGTTGGACCAGCAAGCTTTTACCAGAGTAGTTCAAACTGGGCTCTTAGCAACACTGGTCACTTCTTTGATAGTGGCCTTAAGGACTACTATACCTGGTCTAATAAAACTAATCTTGCCATGGACAATGCCGAACTGTATATGGATGCACGTGTTTCTCCTCTATCTCTAACATATTATGGAATTTGCCTGGGAAATGGAAACTATACAGTAAATCTCCATTTTGCGGAGATAATGTTTACGGATGATCAAACATATAGCAGCCTTGGAAGGCGTATATTTGACATCTATATTCAGGGAAGGTTGGTGCTGAAGGATTTCAATATTGCAAAAGAAGCCGGTGGAGTTGGTAAGGCAATCATAAAGAAGTTCACTGCTATTGTGATTAATAATAACTTGGAGATTCGCCTTCTTTGGGCTGGTAAAGGGACAACTGCTATTCCATTTGGATCAGTATATGGTCCTCTTATATCGGCTATATCGGTTGATCCTGACTTTACACCCCCGGTGGAAAAAGGAAGTAGCATACCTGTGGGGAGTATTGTGGCAATAGTAGTTGCTGGAGCactagttttcataattgtatTTGGCATAGCTTGGTGGAGAATATGTCGACGTAAGATAAGTCCATTGGAAAAAGAAATGAAGAGTTTAGACCTTCAAACGGGTATATTTACCTTGAGACAAATCAAAGAAGCAACAAACAACTTTGATATTTCAAATAAGATTGGTGAAGGAGGATTTGGTCCTGTGTACAAGGGCTGTTTGGCCAATGGGACATTCATAGCAGTCAAACTACTTTCTTCTAAATCAAAACAAGGGAATCGTgagtttttaaatgaaataggCATGATTTCGGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTTGCTCGTGCTTTATTtgGTCCAGAGGAACACCAAATAAGATTAGATTGGTCAACAAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCATTCCTTCATGAAGAATCAAGAATGAAGGTTGTTCATCGGGACATCAAGGCCACCAATGTGTTACTTGATACGGATCTCGACCCAAAGATATCTGATTTTGGTTTAGCCAAGCTTGATGAAGAGGAAAATACTCACATTAGCACTAGAATTGCTGGTACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACCGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCCTTTATCGGACAAAGGAAGAAGCATTCTATCTTCTTGATTGGGCACATTCGTTGAGAGAAAATGGTGACCTAATGGAACTCGTTGATAGAAGATTAGGTTTGgatttgaataaaaaagaagCTCTGGTGATGATCAATGTGGCTCTTCTGTGCACTAATGTCACTTCAAACCTTAGGCCCTCTATGTCGTCAGTGGTAAGTATGCTTGAAGGAACGACTGTGGTTCCAGAATTTGTAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTGATGAGGCAGTATTATTACCAGATGGAAAAAACTGAGATAAGTAAGACAGAGACACAAACTCAGAGTTTATTAAGTGATGGGCCATGGACCGCTACATCTTCATCAGGCATAGACCTTTATCCTATCCGCAGCGAGTCTTCCTATTTGGAGGGAAGAAGTTAA 5808 0.3922 MSTSSQFLFLSLIVIWFISVLAFGATTIHPDEKKALEAIAESLGKKDWNFDIDPCSNKPNWATPKPTPLTPRLSIVENNVTCNCSVAGDNFCHVVSITLKGQNLPGTLPPELSRLHYLQIIDLSRNYLNGTIPKEWGSMTNLLNITLPSNRLTGSIPVEIANISTLIQLDLTANQISDNIPRELGNLTQIRTLRLSSNNFTGELPATLAKLTALLDFQISDNHFSGKIPDFIQNWTNINSLSIQGSGLSGPIPSEISLLRNLTDVRISDLNGSEYAPLPQFNNMPLLKNLILRNCKINGKLHDYLGTITTLKHLDLSFNNISGTIPSTYAETSGVKFIFLTGNLLTGLLPPWKKNIDVDISYNNLSISQGSQMCQSDQVFSHDLLNPASYSLYINCGGNQATVDGINYNYDSDSSGPAKFHVSPTGNWAFSTTGIFIDGDQLGETYLPQNITTLTMADSELYTNARGSPISLTYYGFCLATGSYTVKLHFAEIMFTDDQTYGSLGRRVFDVYLQGNLVQKDFNIAEEAGGVGKKVIKQFKDVDVTSNTLEIRLYWAGKGTQSLPNRSVYGPLISAISVESASPPGSISTGAVVGIVVAATVIIIILLFGILWWKGCFGKKNTLARDLDSLDLQTGLFTLRQIKAATNYFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCMEGDQLLLIYEYLENNSLARALFGPEEHRIKLDWSTRQKICVGIAKGLAYLHEESRLKVVHRDIKATNVLLDTDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTMHRAKEEAFYILDWAHLLKERGDLMELVDGRLGSDFNKKEAMVMINVGLLCTNVTSTLRPSMSSVVSMLEGRTVVPEFVSGSSEVMDEKKLEVMRQHYHQIGETTIIQVMKDIGRTLGKKDWDFSKDPCSGENNWTSSVKVKGFENAVTCNCYFANATICHIISIVLKSQNLSGTLPSEFVKLPYLQQIDLTRNYLNGTIPPQWGSMTNLVNISLLGNRLTGQIPKEIGKITTLKSLVLEFNQLSGKLPPELGNLHQLERLLLTSNNFTGNLPATFSKLAKLKQIRLGDNQFSGTLPDFVQSWTGLERLVMQGSGLSGPVPSGISYLKNLTDLRISDLKGPDSPFPQLINLMVLETLVLRSCNLIGTVPAYLGNITTLRSLDLSFNKLSGQIPNTLGVLENINILYLTGNLFTGPLPNWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFASSSKRSNLGMVSCLGNNGCPKKSYSLHINCGGKIITSNKSLTYDDDSNEVGPASFYQSSSNWALSNTGHFFDSGLKDYYTWSNKTNLAMDNAELYMDARVSPLSLTYYGICLGNGNYTVNLHFAEIMFTDDQTYSSLGRRIFDIYIQGRLVLKDFNIAKEAGGVGKAIIKKFTAIVINNNLEIRLLWAGKGTTAIPFGSVYGPLISAISVDPDFTPPVEKGSSIPVGSIVAIVVAGALVFIIVFGIAWWRICRRKISPLEKEMKSLDLQTGIFTLRQIKEATNNFDISNKIGEGGFGPVYKGCLANGTFIAVKLLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKICVGIARGLAFLHEESRMKVVHRDIKATNVLLDTDLDPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTLYRTKEEAFYLLDWAHSLRENGDLMELVDRRLGLDLNKKEALVMINVALLCTNVTSNLRPSMSSVVSMLEGTTVVPEFVDSSEVMDEKKMEVMRQYYYQMEKTEISKTETQTQSLLSDGPWTATSSSGIDLYPIRSESSYLEGRS 1935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04180 1935 ProSiteProfiles Protein kinase domain profile. 649 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04180 1935 CDD STKc_IRAK 1594 1861 - -
Tsu02g04180 1935 Gene3D Ribonuclease Inhibitor 1132 1324 IPR032675 -
Tsu02g04180 1935 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1306 1902 - -
Tsu02g04180 1935 Pfam Protein kinase domain 651 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04180 1935 Gene3D Transferase(Phosphotransferase) domain 1 725 931 - -
Tsu02g04180 1935 Gene3D Transferase(Phosphotransferase) domain 1 1664 1874 - -
Tsu02g04180 1935 Gene3D Ribonuclease Inhibitor 205 274 IPR032675 -
Tsu02g04180 1935 Gene3D Ribonuclease Inhibitor 32 204 IPR032675 -
Tsu02g04180 1935 Gene3D Ribonuclease Inhibitor 966 1126 IPR032675 -
Tsu02g04180 1935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Tsu02g04180 1935 Gene3D - 388 581 - -
Tsu02g04180 1935 Gene3D - 1325 1515 - -
Tsu02g04180 1935 SUPERFAMILY L domain-like 1007 1284 - -
Tsu02g04180 1935 CDD STKc_IRAK 655 922 - -
Tsu02g04180 1935 Pfam Malectin domain 391 576 IPR021720 -
Tsu02g04180 1935 Pfam Malectin domain 1328 1511 IPR021720 -
Tsu02g04180 1935 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 387 941 - -
Tsu02g04180 1935 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1000 1215 - -
Tsu02g04180 1935 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1306 1902 - -
Tsu02g04180 1935 Pfam Protein tyrosine and serine/threonine kinase 1590 1859 IPR001245 GO:0004672|GO:0006468
Tsu02g04180 1935 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1000 1215 - -
Tsu02g04180 1935 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 83 298 - -
Tsu02g04180 1935 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1215 1273 - -
Tsu02g04180 1935 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 83 298 - -
Tsu02g04180 1935 Pfam Leucine Rich Repeat 1229 1250 IPR001611 GO:0005515
Tsu02g04180 1935 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 387 941 - -
Tsu02g04180 1935 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1215 1273 - -
Tsu02g04180 1935 Gene3D Phosphorylase Kinase; domain 1 1553 1663 - -
Tsu02g04180 1935 Gene3D Phosphorylase Kinase; domain 1 618 724 - -
Tsu02g04180 1935 ProSiteProfiles Protein kinase domain profile. 1588 1840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04180 1935 SUPERFAMILY Protein kinase-like (PK-like) 1571 1871 IPR011009 -
Tsu02g04180 1935 SUPERFAMILY Protein kinase-like (PK-like) 632 927 IPR011009 -
Tsu02g04180 1935 Gene3D Ribonuclease Inhibitor 275 386 IPR032675 -
Tsu02g04180 1935 SUPERFAMILY L domain-like 89 357 - -
Tsu02g04180 1935 SMART serkin_6 1588 1859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04180 1935 SMART serkin_6 649 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04180 1935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1710 1722 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04180 Tsu-Chr2 49238178 49274712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04180 20 963 Receptor kinase-like Gene Family AT1G53420 52.905 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g04180 PK_Tyr_Ser-Thr 8.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04180 - - gmx:100786496 1444.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04180 02 49238178 49274712 Tsu02g04180 02 49238178 49274712 ECH