Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04179 ATGAGCACTTCCTCTCAATTTCTCTTCCTTTCACTAACTGTCATTTGCTTCATATCTCTAACAGCTTCTGCTACTACTACTATTCATCCCGTCGAAAAGAAAGCTCTCGAAGGTATAGCTAAATCACTTGGTAAGAAAGATTGGAATTTCGATATAGATCCATGCAGCAACAAATCTAACTGGGTTTCGCCTACCATAACAAATATCAAACATAACAATGCCGAAGTGGTCAATGAAGTCATATGTAACTGTTCTGTTGCTGGTGACAACTTCTGCCATGTTGTTATAATAAATTTGAATGGGCAAAGTCTTCCCGGCACTCTCCCACCGGAACTGAACAAGTTGTCTTACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAGTGGTACAATTCCTAAAGAATGGGGCACCATGACGAATCTTCTTAAAATTTCTCTCCATGGAAATCGGTTAACGGGTTCAATACCAGGGGAGATTGCAAACATATCTACTCTACGAATTTTGGAGGTATGGACCAATCAAATGTCGGGATATCTTCCTCCTGAGCTTGGGAATCTAAACCAAATTCGAACACTGCGAGTTTCCTCTAACAATTTTACTGGAGAACTACCTGTGACATTGGCAAAGCTCACCACATTGCAAGATTTCCAAATTGACGACAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGAGAAATATCAATAAACTAATGATTCAAGGAAGTGGATTGAGTGGGCCGATTCCTTCTGGAATTTCACTTTTGACAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATCTGTTTATGCACCTTTGCCACAACTTAATAATATGGCATTGTTAAAAATACTGGTTCTAAGGAATTGCAACATCAATGGAACACTCCCTAAAAGTCTCGGGAATATGACAACATTAAAGCACTTAGACCTCAGCTTTAACAAATTAAGTGGAACAATTCCGATGGCCTATGCTATTGCTGACACAAAATTGACATACATATTTTTAACTGGAAACCTTCTCACTGGACAAGTGCCTCCTTGGGGAAAGAAGAATGTCTACGCAGATCTTTCATACAATAACTTCAACATCAGCCAAGGGATTCAGATGTGTCAAGATGCAAAAGTAAACTTGTTTTCTACCTCATGGGCACACAACGACATAGGAACAGATTCGTGTTTGAGAGAATGTCCCAAACCCTCATATTCCCTTTATATAAATTGTGGTGGAAAACAAGCAAGAGTCAACAACACAAGCTATGAGGATGATTCAGAATCATCTGGATCAGCTAGATTTGTTGCCAGTCAAACGGGAAAATGGGCATCTAGCACCACTGGTGCATTCATTGATAGTGATCAACATGGAGATAGTTATACTCGAAAAAATACCTCTACACTTACTATGGTGGATGCTGAATTATACATGACCGCACGTGTTTCTCCTATTTCTTTGACTTATTTTGCGTTTTGCTTGGAAAATGGAAGATACACGGTAGATCTACACTTTGCTGAAATAATGTTCATAAACGATCAAACTTATGGTAGTCTTGGAAGACGTCTATTTGATATCTATCTTCAGGGCAAgccaatgcaaaaggacttcaATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCGTAAAGAGATACAAAAAAGTTGTTGTTACTAATAATACATTAGAGATCCGTTTATATTGGGCTGGAAAAGGGAGAGAGGCTCTCCCAGATAAATCAGTATATGGTCCTCTTATATCAGCTATATCAATGGAATCTGATTCTGCACCTCGAAGCATGTCTGCAGGAACTGTGGTTGGAATTGTGGTTGCAGCAACAATTATTATCATTCTATTATTTGGTATACTTTGGTGGAAAGGGTGTTTTGGAAAGAAAAACTCTTTAGAAAGAGAGCTGAAGAGTTTAGACCTACAAACAAGTTTATTTACCTTTAGGCAAATCCGAGCAGCAACAAATAACTTCGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCAGTGTTTAAGGGTGTTCTTTCGGATGGAACAATAGTAGCAGTTAAGCAACTTTCTTCTAAATCAAAGCAAGGCAATCGCGAGTTTATAAATGAGATTGGCCTTATTTCGGCTTTGCAACACCCTTGTCTAGTTAAGCTCTATGGTTGTTGTATGGAGGGAGATCAGTTGTTGCTGATATATGaatacatggaaaataataGTCTTGCTCGCGCTTTGTTTGCCAAAGAAAAAGCTGAGCTGAAATTGGATTGGCAAGCGAGGAGGAAAATTTGTGTAGGTATTGCTAGAGGTTTGGCTTACCTTCATGAAGAGTCGAGGCTAAAGATAGTTCATAGAGACATCAAGGCAACTAATGTGTTACTCGATAAAGATCTGAATCCAAAGATATCTGATTTTGGTTTGGCCAAACTTAAAGATGACGGATACACCCACATAACAACTAGAGTAGCAGGCACTTATGGATATATGGCTCCAGAATATGCAATGCATGGATATTTGACCGAGAAAGCGGATGTTTATAGTTTTGGCGTCGTTGCCTTGGAAATTGTTAGTGGAAAGCACAACACCATGAGTTGGCCTAAGGATGATTGCTTCTCTCTTGTTGATTGGGTGCATGTCTTGAAGGAAGAAGGTAACATAATGGAACTAGTTGATGACATGTTAGGTGAAGAATTCAAAAAAGAggaagcaatgataatgatcaATGTGGCACTTTTATGCACTCATGTTTCTCCAATGAACAGACCAACCATGTCATCAGTGGTTAACATGCTTGAAGGAAAATCTGTTGTTCAAGAAGTTGTTTCTGACACAAGTCAAGTTTTTGAAGGAAAGAAGTTAGAGATGATTCAACAATATTACcaacaaagtgaaaaaaatgaTACACCTGAGATTGAGACACAAGAAGAGAGCATAATAATAGATTCAACTGCAGAATATATGTCTGATGCAGATCTACATTCTATCAATATGGATTATCCTTGTACAAGTTCAAATACtttgtag 3039 0.3748 MSTSSQFLFLSLTVICFISLTASATTTIHPVEKKALEGIAKSLGKKDWNFDIDPCSNKSNWVSPTITNIKHNNAEVVNEVICNCSVAGDNFCHVVIINLNGQSLPGTLPPELNKLSYLQTIDLSRNYLSGTIPKEWGTMTNLLKISLHGNRLTGSIPGEIANISTLRILEVWTNQMSGYLPPELGNLNQIRTLRVSSNNFTGELPVTLAKLTTLQDFQIDDNQFSGKIPDYIQNWRNINKLMIQGSGLSGPIPSGISLLTNLTDLRISDLNGSVYAPLPQLNNMALLKILVLRNCNINGTLPKSLGNMTTLKHLDLSFNKLSGTIPMAYAIADTKLTYIFLTGNLLTGQVPPWGKKNVYADLSYNNFNISQGIQMCQDAKVNLFSTSWAHNDIGTDSCLRECPKPSYSLYINCGGKQARVNNTSYEDDSESSGSARFVASQTGKWASSTTGAFIDSDQHGDSYTRKNTSTLTMVDAELYMTARVSPISLTYFAFCLENGRYTVDLHFAEIMFINDQTYGSLGRRLFDIYLQGKPMQKDFNIAEEAGGVGKKVVKRYKKVVVTNNTLEIRLYWAGKGREALPDKSVYGPLISAISMESDSAPRSMSAGTVVGIVVAATIIIILLFGILWWKGCFGKKNSLERELKSLDLQTSLFTFRQIRAATNNFDISNKIGEGGFGPVFKGVLSDGTIVAVKQLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFAKEKAELKLDWQARRKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDDGYTHITTRVAGTYGYMAPEYAMHGYLTEKADVYSFGVVALEIVSGKHNTMSWPKDDCFSLVDWVHVLKEEGNIMELVDDMLGEEFKKEEAMIMINVALLCTHVSPMNRPTMSSVVNMLEGKSVVQEVVSDTSQVFEGKKLEMIQQYYQQSEKNDTPEIETQEESIIIDSTAEYMSDADLHSINMDYPCTSSNTL 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04179 1012 SMART serkin_6 665 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04179 1012 SUPERFAMILY Protein kinase-like (PK-like) 648 938 IPR011009 -
Tsu02g04179 1012 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 386 976 - -
Tsu02g04179 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 297 351 - -
Tsu02g04179 1012 SUPERFAMILY L domain-like 88 351 - -
Tsu02g04179 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Tsu02g04179 1012 Gene3D Ribonuclease Inhibitor 32 206 IPR032675 -
Tsu02g04179 1012 Gene3D Ribonuclease Inhibitor 207 272 IPR032675 -
Tsu02g04179 1012 Gene3D Ribonuclease Inhibitor 273 383 IPR032675 -
Tsu02g04179 1012 Gene3D Transferase(Phosphotransferase) domain 1 741 953 - -
Tsu02g04179 1012 Pfam Malectin domain 408 593 IPR021720 -
Tsu02g04179 1012 CDD STKc_IRAK 671 938 - -
Tsu02g04179 1012 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 297 351 - -
Tsu02g04179 1012 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 82 298 - -
Tsu02g04179 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 386 976 - -
Tsu02g04179 1012 Gene3D Phosphorylase Kinase; domain 1 633 740 - -
Tsu02g04179 1012 ProSiteProfiles Protein kinase domain profile. 665 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04179 1012 Pfam Protein tyrosine and serine/threonine kinase 667 936 IPR001245 GO:0004672|GO:0006468
Tsu02g04179 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 82 298 - -
Tsu02g04179 1012 Gene3D - 406 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04179 Tsu-Chr2 49194310 49218178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04179 65 966 Receptor kinase-like Gene Family AT1G53420 54.814 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g04179 PK_Tyr_Ser-Thr 6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04179 - - gmx:732563 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04179 02 49194310 49218178 Tsu02g04179 02 49194310 49218178 ECH