Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04178 ATGAAGCACATCATCATAAACATGAATTTCTCTCTAATACTCCATATTTTACTTCTTgcattttctttgatttcttcattTACTAGTGGAGCTACTCTGCCACAACAAGAAGTACAAGTTATGAAAGACATAGGCAAGAGACTTGGGAAGAAGGATTGGGACTTCAGCATAGATCCATGCAGTGGACAAAGTAACTGGATCACATCTTCTGTGCAACTGAAAGGGTTTCAAAATACTGTCACTTGCAATTGCTCATTTGTCAATGCCACTGTCTGCCATATTGTTAGCATTGTTTTGAAGTCACAAAATCTTTCTGGCACACTTCCAACAGAACTTGTGAATTTGCCTTACCTCCAAGAAATTGATCTCGGAAACAACTACCTTAATGGTACAATTCCACCACAATGGGGTTCCATGATCAATCTTGTCAACATTTCACTATTAGGAAATCGATTAACAGGTCCAATCCCAAAAGAGCTTGGAAAAATCACCGGCCTGCAAAAGCTGATCCTGAAGTTCAATCAATTATCTGGAAACCTTCCTCCAGAGCTTGGGAATCTTTACCAGCTTGAAAGACTGATTCTTTCCTCGAACTATTTTACTGGAAATTTACCTGCAACATATGCTAAGCTCACTAAATTGAAGCAAATTCGACTTTGCGATAATCAATTCTCTGGACCTATACCTGATTTCATTCAAAGTTGGACAAGTCTTGAGAGGATGGTGATGCAAGGGAGTGGTTTGAGTGGCCCAATTCCATCTGGAATTTCATATCTAAAAAACCTCAGTGATTTGAGAATAACTGACTTGAAAGGACCAGATTCTCCTTTTCCGCAACTAATTAACTTGACAGTAATGGATACATTAGTACTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGATTATTTTGGAAATATTACCACTTTAAGATCATTAGACCTCAGTTTTAACAAATTAAGTGGACAGATACCGGACACTTTGGGCGTCCTCGAGGACATAAATCTACTATACTTAACTGGAAACCTTTTTACTGGACCACTTCCGAAATGGATAGCTAGACCAGACTACACAGATATATCATATAACAACTTGAGCATTGAAAATCCAGAGCAGTTGACATGTCAACAGGGAACCGTGAACTtattttcatcatcttcaagGGGAAGTAACTTGGGAATGGCTTCATGTTTGGGGAACAATGGCTGTCCTAAAAATTCATACTCTCTACATATCAATTGTGGTGGGAAGCTCATTACTTCTTATAAAAGCGTGACATATGATGACGATTCAAATGAAGTTGGACCAGCAAGCTTTCACCGGAGTAGTTCGAACTGGGTTCTTAGCAACACTGGTCACTTCTTTGATACTGGCCTTAAGGACTACTATACCTGGTCTAATAAAACTAATCTTTCCATGGAAAATGCCGAACTGTATATGGATGCACGTGTTTCTCCTCTTTCTCTAACATATTACGGATTTTGCCTGGGAAATGGAAACTACACTGTAAATCTCCATTTTGCGGAGATAATGTTTACAGATGATCAAACATATACCAGCCTTGGAAGGCGTATATTTGACATCTATATTCAGGGAAGGTTGGTGCTGAAGGATTTCAATATCGCAAAAGAAGCCGGTGGAGTGGGTAAGGCAATCATAAAGAAGTTCACTGCTATTGTGACTAGTAATACGTTGGAGATTCGCCTTCATTGGGCTGGGAAAGGGACAACTGGTCTCCCATTTGATTCAGTATATGGACCTCTTATATCCGCTATATCAGTTGATCCTGACTTTACACCTCCAGTGGAAAAAGGAAGTAGCATACCTGTGGGGAGTATTGTGGCAATAGTAGTTGCTGGAGCACTAGTTATCTTATTTGTATTTGGCATAGCTTGGTGGAGAATATGTCAACGACAGATAGGTCCACTAGAAAGAGAGTTGAAGAATTTAGACCTTCAAACGGGTATATTTACCTTCAGACAAATCAAAGAAGCAACAAACAACTTTGATGTTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAACAACTTTCGTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATTGGCATGATTTCTGCTTTGCAACATCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGCAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACACCAGATAAGATTAGATTGGTCAAGAAGGAAGAGGATTTGTGTTGGTATTGCTAGAGGTTTAGCATTTCTTCATGAAGAATCAAGATTGAAGGTTGTTCATCGGGACATCAAGGCAACTAATGTGTTACTTGATGCGGATCTCGACCCGAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGCACTAGAATTGCCGGGACGTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCCTTTATCGGACAAAGGAAGAAGCATACTATCTTCTTGATTGGGCACATATGTTGAAAGAGAGAGGTGACCTAATGGAACTAGTTGATAGCAGATTAGGTTCAGatttcaacaaaaaagaagCTCTGGCGATGATCAATGCGGCTCTCCTATGCACCAATGTCACTTCGAACCTTAGGCCTTCTATGTCGTTAGTAGTAAGTATGCTTGAAGGAAACACTGCGGTTCCCGAATCCATGCCAGATTCAAGTGAAGTAATGGATgaaaagaaaatggaaataatgAGGCAGTATTACTATCAGAAGGAAGAAGATAAGACAAGCAAGTCACAAACACAGAGTCGGTGTTTATTAAATGATGGACCATGGACTGCTACATCTTCATCAGGTGTAGACCTTTATTCTATCCACCTTGATTCTTCCTATTTGGAGGAAAGAAATTAA 3054 0.3883 MKHIIINMNFSLILHILLLAFSLISSFTSGATLPQQEVQVMKDIGKRLGKKDWDFSIDPCSGQSNWITSSVQLKGFQNTVTCNCSFVNATVCHIVSIVLKSQNLSGTLPTELVNLPYLQEIDLGNNYLNGTIPPQWGSMINLVNISLLGNRLTGPIPKELGKITGLQKLILKFNQLSGNLPPELGNLYQLERLILSSNYFTGNLPATYAKLTKLKQIRLCDNQFSGPIPDFIQSWTSLERMVMQGSGLSGPIPSGISYLKNLSDLRITDLKGPDSPFPQLINLTVMDTLVLRSCNLIGTVPDYFGNITTLRSLDLSFNKLSGQIPDTLGVLEDINLLYLTGNLFTGPLPKWIARPDYTDISYNNLSIENPEQLTCQQGTVNLFSSSSRGSNLGMASCLGNNGCPKNSYSLHINCGGKLITSYKSVTYDDDSNEVGPASFHRSSSNWVLSNTGHFFDTGLKDYYTWSNKTNLSMENAELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYTSLGRRIFDIYIQGRLVLKDFNIAKEAGGVGKAIIKKFTAIVTSNTLEIRLHWAGKGTTGLPFDSVYGPLISAISVDPDFTPPVEKGSSIPVGSIVAIVVAGALVILFVFGIAWWRICQRQIGPLERELKNLDLQTGIFTFRQIKEATNNFDVSNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLANNSLARALFGPEEHQIRLDWSRRKRICVGIARGLAFLHEESRLKVVHRDIKATNVLLDADLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTLYRTKEEAYYLLDWAHMLKERGDLMELVDSRLGSDFNKKEALAMINAALLCTNVTSNLRPSMSLVVSMLEGNTAVPESMPDSSEVMDEKKMEIMRQYYYQKEEDKTSKSQTQSRCLLNDGPWTATSSSGVDLYSIHLDSSYLEERN 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04178 1017 SMART serkin_6 669 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04178 1017 Gene3D Transferase(Phosphotransferase) domain 1 745 964 - -
Tsu02g04178 1017 CDD STKc_IRAK 675 942 - -
Tsu02g04178 1017 ProSiteProfiles Protein kinase domain profile. 669 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04178 1017 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 387 980 - -
Tsu02g04178 1017 Pfam Leucine Rich Repeat 310 331 IPR001611 GO:0005515
Tsu02g04178 1017 SUPERFAMILY L domain-like 88 365 - -
Tsu02g04178 1017 SUPERFAMILY Protein kinase-like (PK-like) 652 952 IPR011009 -
Tsu02g04178 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Tsu02g04178 1017 MobiDBLite consensus disorder prediction 981 999 - -
Tsu02g04178 1017 Gene3D - 405 596 - -
Tsu02g04178 1017 MobiDBLite consensus disorder prediction 973 999 - -
Tsu02g04178 1017 Gene3D Ribonuclease Inhibitor 207 272 IPR032675 -
Tsu02g04178 1017 Pfam Malectin domain 409 592 IPR021720 -
Tsu02g04178 1017 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 296 354 - -
Tsu02g04178 1017 Gene3D Phosphorylase Kinase; domain 1 637 744 - -
Tsu02g04178 1017 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 296 354 - -
Tsu02g04178 1017 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 387 980 - -
Tsu02g04178 1017 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 81 297 - -
Tsu02g04178 1017 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 81 297 - -
Tsu02g04178 1017 Gene3D Ribonuclease Inhibitor 273 394 IPR032675 -
Tsu02g04178 1017 Gene3D Ribonuclease Inhibitor 51 206 IPR032675 -
Tsu02g04178 1017 Pfam Protein kinase domain 670 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04178 Tsu-Chr2 49180759 49187906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04178 24 969 Receptor kinase-like Gene Family AT1G53420 54.859 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g04178 Pkinase 6.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04178 - - gmx:100786496 1452.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04178 02 49180759 49187906 Tsu02g04178 02 49180759 49187906 ECH