Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04177 ATGACCAATCTTGTCAACATTTCACTATTAGGAAATCGATTAACAGGTCCAATCCCAAAAGAGCTTGGAGAAATCACCACCCTGCAAAAGTTGATCTTGAAGTTCAATCAATTATCTGGAAATCTTCCTCCAGAGCTTGGGAATCTTCACCAGCTTGAAAGACTGATTCTTTCCTCCAACTATTTTACTGGAAATTTACCTGCAACATATTCTAAGCTCACTAAACTGAAGCACATTCGACTTTGCGATAATCAGTTCTCTGGACCTATACCTGACTTCATTCAGAGCTGGACAAGTCTTGAGAGGCTGGTGATGCAAGGGAGTGGTTTGAGTGGCCCAATTCCTTCAGGAATTTCATATCTAAAAAACCTCACCGACTTGAGAATAAGTGACTTGAAAGGGTCAGATTCTACTTTTCCCCAGCTTCTTAACTTGACAAATCTGGAAACATTAGTACTGAGGAGTTGCAATCTTATAGGAAGAGTACCTGAATATCTCGGAACTATTACCAATTTAAAATCATTAGACCTCAGTTTTAACAAATTAAGTGGACCGATTCCAAACACCTTGGGCGGCCTCGTGAACAATAATTTACTATACTTAACTGGAAACCTTTTTACTGGACCACTGCCAAATTGGATTGCTAGACCAGACTACACAGATCTTTCATATAACAATTTGAGCATTGAAAATCCAGAGAAGTTAACATGTCAACAAGGAACTGTGAACTTGTTTGCATCATCTTCAAAGAGAAGTAACTTAGGAATGGTTTCATGTTTGGGGAACAATAGCTGTTCTAAAAATCGGTACTCTCTCCGTATAAATTGTGGTGGTAAGCTCACAACTTCTAATGAAAGTTTGACATATGATGATGATTCAAATGAAGTTGGACCTGCAAGCTTTAGGCAAACCGCATCAAATTGGGCACTTAGCAATACTGGTCACttctttgataaaaataatagcCTTGTGGATTACTCTACCTGGTCTAATAAAACTAATCTTGCCATGGAAAATGCCGAACTGTATATGAATGCACGCGTTTCTCCTCTTTCTTTAACATACTACGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTCCATTTTGCGGAGATAATGTTCTCGGATGATCAAACATATAACAGCCTTGGAAGGCGTATATTTGACATCTATATTCAGAATAGGTTAGTGCTGAAGGATTTCAATATTGCAAAAGAAGCCGGTGGAGTTGGTAAGGCAATCATAAAGAATTTCACTGCTATTGTGACTACTAATACGTTGGAAATTCGCCTTCGTTGGGCTGGGAAAGGGACAACTGGAATCCCATTTGATTCAGTATATGGTCCTCTTATATCGGCTATATCGGTTGATCCTGACTTTACACCCCCGGTGGAGAAGGGAAGTAGCATACCTGTGAAGGTTATTGTTGCAGTTGTAGTTGCTGGTGTACTAGTTATATTCATGGTATTTGGTTTTGCTTGGTGGAGAAGATGCCGACGGCAGAGAGGTCCATTAGAAAGAGAGCTAAAAGGTTTAGAATTCCAACCTGGGTTATTTACGTTACGACAAATCAAAGCAGCAACTAACAACTTCGATATTGAGTTTAAGATTGGTGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTTCTTTCGGATGGCACAATAGTAGCCGTTAAGCAGCTTTCTTCTAAATCAAAACAAGGGAATCGCGAATTTATAAATGAGATTGGCTTGATTTCCGCTTTGCAACACCCTTGTCTAGTTAAGCTATATGGTTGTTGTATGGAAGGAGATCAGTTGTTGCTAATATATGAATACATGGAAAACAATAGCCTTGCTTGtgctttgtttgccaaagaaaaagatcaattgaaattgaaattgactTGGTCAACAAGGAAGAAAATTTGCATCGGTATTGCTAGAGGTTTGGCTTACCTTCATGAAGAGTCCAGGCTAAAGATAGTTCACAGAGACATCAAGGCAACTAATGTGTTACTTGATAAAGATCTCAATCCAAAGATATCTGATTTTGGCTTGGCCAAGCTTAAAGATGACGGATACACCCACATAACCACTAGAATAGCCGGCACTTATGGATACATGGCTCCAGAATATGCAATGCATGGTTATTTAACGGACAAAGTTGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATAGTTAGTGGGAAGCACAACACCATGAACCAGCCAAAGGATGAATGCTTCTCTCTTGTTGATTGGGTGCGTCTCTTGAAGGAAGAAGGTAATATAATGGACCTAGTTGATGAGAGGTTAGGTGAAGATTTCAAAAAAGAggaagcaatgataatgatcaATGTGGCTCTTTTATGCACTAATGTTTCTCCAATGCACAGACCAACAATGTCATCAGTGGTAAGCATGCTTGAAGGAAAATCTATTGTTCAAGAAGTTGTTTTCGACACAAGCCAagtttttgaaggaaaaaagaaaaagatgattcaacaaaatgaaaaaaatgatacaTCTGAGATTGAGACTACTGAAGAAGAGAGTATCTTAATAGATTCAACTGCAGACTATATGTCTGATGCAGATCTACATTCTACCAACATGGATTCTCCTTATAGAAGTTTCAACACTTTGTAA 2640 0.3727 MTNLVNISLLGNRLTGPIPKELGEITTLQKLILKFNQLSGNLPPELGNLHQLERLILSSNYFTGNLPATYSKLTKLKHIRLCDNQFSGPIPDFIQSWTSLERLVMQGSGLSGPIPSGISYLKNLTDLRISDLKGSDSTFPQLLNLTNLETLVLRSCNLIGRVPEYLGTITNLKSLDLSFNKLSGPIPNTLGGLVNNNLLYLTGNLFTGPLPNWIARPDYTDLSYNNLSIENPEKLTCQQGTVNLFASSSKRSNLGMVSCLGNNSCSKNRYSLRINCGGKLTTSNESLTYDDDSNEVGPASFRQTASNWALSNTGHFFDKNNSLVDYSTWSNKTNLAMENAELYMNARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFSDDQTYNSLGRRIFDIYIQNRLVLKDFNIAKEAGGVGKAIIKNFTAIVTTNTLEIRLRWAGKGTTGIPFDSVYGPLISAISVDPDFTPPVEKGSSIPVKVIVAVVVAGVLVIFMVFGFAWWRRCRRQRGPLERELKGLEFQPGLFTLRQIKAATNNFDIEFKIGEGGFGPVYKGVLSDGTIVAVKQLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLACALFAKEKDQLKLKLTWSTRKKICIGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDDGYTHITTRIAGTYGYMAPEYAMHGYLTDKVDVYSFGVVALEIVSGKHNTMNQPKDECFSLVDWVRLLKEEGNIMDLVDERLGEDFKKEEAMIMINVALLCTNVSPMHRPTMSSVVSMLEGKSIVQEVVFDTSQVFEGKKKKMIQQNEKNDTSEIETTEEESILIDSTADYMSDADLHSTNMDSPYRSFNTL 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04177 879 Gene3D Transferase(Phosphotransferase) domain 1 609 828 - -
Tsu02g04177 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Tsu02g04177 879 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 158 216 - -
Tsu02g04177 879 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 249 849 - -
Tsu02g04177 879 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 159 - -
Tsu02g04177 879 Pfam Malectin domain 271 456 IPR021720 -
Tsu02g04177 879 Gene3D Phosphorylase Kinase; domain 1 500 608 - -
Tsu02g04177 879 SUPERFAMILY L domain-like 2 227 - -
Tsu02g04177 879 SMART serkin_6 533 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04177 879 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 158 216 - -
Tsu02g04177 879 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 249 849 - -
Tsu02g04177 879 CDD STKc_IRAK 539 808 - -
Tsu02g04177 879 Gene3D - 266 460 - -
Tsu02g04177 879 Pfam Protein kinase domain 536 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04177 879 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515
Tsu02g04177 879 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 3 159 - -
Tsu02g04177 879 ProSiteProfiles Protein kinase domain profile. 533 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04177 879 SUPERFAMILY Protein kinase-like (PK-like) 516 809 IPR011009 -
Tsu02g04177 879 Gene3D Ribonuclease Inhibitor 1 259 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04177 Tsu-Chr2 49168526 49175573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04177 4 828 Receptor kinase-like Gene Family AT1G53420 56.053 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g04177 Pkinase 5.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04177 - - gmx:100786496 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04177 02 49168526 49175573 Tsu02g04177 02 49168526 49175573 ECH