Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04163 atgaaaattCAATGTAACGTGTGTGAAGGTGCTGAAGCTAAGGTTCTTTGTTGTGCTGATGAAGCAGCTTTGTGTTGGGAATGTGATGAGAAAGTTCATGCTGCTAATAAACTTGCTAGTAAACATCAAAGAGTTCCTCtttctacttcttcttcttctcatatGCCTAAATGTGATATTTGTCagGAAGCATTCGGCTATTTCTTTTGTCTCGAGGATCGTGCTTTACTCTGTCGAAAATGTGATTTAGCAATACACACTGCAAATGCCTTTGTCTCAGGACATCAAAGGTTTCTTCTCACCGGTGTAAAAGTTGGCCTTGAAGATGCTGATCCCGGCGCTTCCTCAAATTCCATGAAGTCAGATTCTTGTGAGAAAGTTTCCGATACAAAATCTTCTTCTGTATCTAGAAAGGTTTCCACAATGCCTCAGTCATCAGAATACAATGAAATGTTTCCTACTGATCAAGGTGGAAGAGCTATGGAATTTCCACCGACAAAGGTTTCGTATGGTGGTGGTTCTTCATCTGGAAACATGTCACAGTGGACAATCGATGAATTTTTCGGCGTAAATGATTTCAGTCAGAATTATAACTACATGGATGGATCATCAAGGGCTGACAGTGGTAAGCTTGATGATTCTGATTCTCCTATTTTAAGATCCAACGAAGAAGAAATGGAGTACGACGACTACATGGACCGCGTTCCAGATTCATCTTGGACAGTTCCTCAAATCCCTTCACCACCTACAGATTCTGGACTATACTGGCCGAAAAACCCTCGGTATGCATCCGATAATGCTCTATTTGTTCCTGACATAGGCATTTCTACCATGCAACATCCTCAGAATAGTAGTAATTTTTCAAGACCGCGGTATCATCACTAA 885 0.3977 MKIQCNVCEGAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAFVSGHQRFLLTGVKVGLEDADPGASSNSMKSDSCEKVSDTKSSSVSRKVSTMPQSSEYNEMFPTDQGGRAMEFPPTKVSYGGGSSSGNMSQWTIDEFFGVNDFSQNYNYMDGSSRADSGKLDDSDSPILRSNEEEMEYDDYMDRVPDSSWTVPQIPSPPTDSGLYWPKNPRYASDNALFVPDIGISTMQHPQNSSNFSRPRYHH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04163 294 MobiDBLite consensus disorder prediction 276 294 - -
Tsu02g04163 294 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Tsu02g04163 294 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270
Tsu02g04163 294 MobiDBLite consensus disorder prediction 275 294 - -
Tsu02g04163 294 MobiDBLite consensus disorder prediction 114 149 - -
Tsu02g04163 294 MobiDBLite consensus disorder prediction 111 149 - -
Tsu02g04163 294 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 283 - -
Tsu02g04163 294 CDD Bbox1_BBX-like 5 47 - -
Tsu02g04163 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tsu02g04163 294 MobiDBLite consensus disorder prediction 234 257 - -
Tsu02g04163 294 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Tsu02g04163 294 CDD Bbox1_BBX-like 57 100 - -
Tsu02g04163 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 283 - -
Tsu02g04163 294 Gene3D Classic Zinc Finger 1 93 - -
Tsu02g04163 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tsu02g04163 294 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04163 Tsu-Chr2 48911591 48914426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04163 1 277 C2C2-CO-like Transcription Factor Family AT1G78600 48.875 9.31e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Tsu02g04163 zf-B_box 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04163 - - gmx:100790959 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04163 02 48911591 48914426 Tsu02g04163 02 48911591 48914426 ECH