Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04161 ATGTTCTTTCATAAAGGTGTGAAGGAGTTTGAAGCCAAGTGGATAGGTTGGGCTGGAGTCAATGTGGCGGATGAGGTTGGACAGAAGTCACTCTCCGAAGCATTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTACTGAAGAGATTGTTCATCAGTACTATAATGGTTATTGCAATAACATATTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGTCTAGCGACAACTCGTGGTTTCCAGTCTCAATTTGATTCGTATCAGCAGGCAAATCAAATGTTTGCTGATGTTGTAAATGAGGTCTATGAAGAGGGAGATATTGTTTGGTGCCATGATTACCATCTAATGTTTCTACCACAATGCTTAAAGAAATTcaacaagaaaatgaaagttgGCTGGTTTCTCCATACCCCGTTTCCATCTTCTGAAATTCACAGGACACTACCATCTCGTTCAGAGCTCCTGCGTGCAGTTCTTGCTGCTGATTTGGTCGGTTTTCACACCTATGATTATGCACGACACTTTGTTAGTGCTTGTACTCGCATTCTTGGACTTGAGGCCACACCAGAAGGGGTTGAGGATCATGGGAAACTGACACGAGTTGCTGCCTTTCCAATTGGTATAGACTCAGAGCGCTTCATTCGTGCACTTGACCATCCTGATGTCCAAAGTCCCTTCAAAGACTTACAAGAAAGATTTAAAGGCAGAAAGGTTATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAACTTCTagcttttgagaaatttttggaagaaaatgaaGCTTGGCGAGATAAAGTTGTTCTGCTTCAAATTGCTGTGCCAACAAGAACGGATGTTCCAGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTGACTGCTGTTCCTATACATCACCTGGACCGCACTCTTGACTTTTATGCACTATGTGCTTTGTACGCTGTTACAGATGTCGCAATTGTCACCTCTTTAAGGGATGGAATGAATCTTGTCAGTTACGAGTTCGTGGCCTGCCAAGAAAAAAAGAAGGGTGTTCTCATTCTTAGTGAATTTGCTGGTGCGGCGCAGTCTCTTGGTGCTGGGGCACTTCTGGTCAACCCCTGGAACATCTCAAAAGTGGCTGAAACAATTGGCAGAGCTCTGAACATGCCATCTGATGAGAGAGAGAAACGACATAGGCACAACTTCCATCATGTAACAACCCACACTGCACAGGAATGGGCAGAAACTTTTGTTAGCGAACTAAATGATACTGTTGTTGAGGCTCAGCTAAGGACAAAGCAAGCTCCACCACGGCTCCCAACCCCGAAAGCAATTCAACAATATCTGAAGTCAACTAATCGATTGCTTATTTTGGGATTCAATGGAACTTTAACTGAGCCAGTTGAGAGAAAAGGTGATCAATTGAAAGAAATGGAACTCTCAGTGCATCCAGAACTAAAACAACCCTTGACACAACTTTGCAGAGACCCAAATACTACAGTTGTCGTGCTTAGTGGAAGTGGTAGAACACTTCTAGATGAAAACTTTAGAGAATATAACACTTGGCTGGCAGCGGAGAATGGGATGTTTTTAAACCCTTCAAATGGGGAATGGATGACAACAATGCCAGAACAACTAAATATGGAATGGGTTGACAGCGTTAAGCATATTTTTGAGTATTTCACTGAAAGAACACCTCGGTCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAATTACAGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAACATCTATGCTCAGGTCCAATTTCAAGTGCATCGGTTGAAGTAGTTCAAGGGAGCCGATCAGTTGAGGTGCGAGCTGCTGGTGTTACAAAGGGAGCAGCCATTGACCGCATCCTGGGGGAGATAGTTCACAGTAAATCCATGACAACACCAATTGATTATGTTCTGTGTATAGGACATTTTCTGGGAAAGGATGAAGACATATACGACTTTTTCGAGCCAGAGCCTTCTTGTTATGGTGCGAGTCTTCAACGAAGCAAGTTAACAGATGCAGCTAAGTTTCCTAATGAGAAGGTATCACCTATGAAGATCCCAGCAATTAAAAATGGATTCAAGTCAACAAATCAAAACAAGGGACAACGGCCTATCTCAAATTCAGAGAAGAAAACAAATCATTTCAGCCGGGCAGCACGGAAGCCAGCTCCCGAAAAGATCTCTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCATGTGCTGTTGGGAGAACTCAAACAAATGCTCGCTTTACGCTTCCATCATCTGATGGGGTTGCTGAATTTCTAAAGAAACTTGCACATGCATCTTCTAGTAATAACTGA 2418 0.421 MFFHKGVKEFEAKWIGWAGVNVADEVGQKSLSEALAEKRCIPVFLTEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRGFQSQFDSYQQANQMFADVVNEVYEEGDIVWCHDYHLMFLPQCLKKFNKKMKVGWFLHTPFPSSEIHRTLPSRSELLRAVLAADLVGFHTYDYARHFVSACTRILGLEATPEGVEDHGKLTRVAAFPIGIDSERFIRALDHPDVQSPFKDLQERFKGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENEAWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRTLDFYALCALYAVTDVAIVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGALLVNPWNISKVAETIGRALNMPSDEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAQLRTKQAPPRLPTPKAIQQYLKSTNRLLILGFNGTLTEPVERKGDQLKEMELSVHPELKQPLTQLCRDPNTTVVVLSGSGRTLLDENFREYNTWLAAENGMFLNPSNGEWMTTMPEQLNMEWVDSVKHIFEYFTERTPRSHFEEREASLVWNYRHADVEFGKLQARDMLQHLCSGPISSASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDIYDFFEPEPSCYGASLQRSKLTDAAKFPNEKVSPMKIPAIKNGFKSTNQNKGQRPISNSEKKTNHFSRAARKPAPEKISWNVLDLKKENYFSCAVGRTQTNARFTLPSSDGVAEFLKKLAHASSSNN 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04161 805 TIGRFAM T6PP: trehalose-phosphatase 467 684 IPR003337 GO:0003824|GO:0005992
Tsu02g04161 805 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 7 436 IPR012766 GO:0003825|GO:0005992
Tsu02g04161 805 Gene3D Glycogen Phosphorylase B; 218 420 - -
Tsu02g04161 805 SUPERFAMILY HAD-like 468 798 IPR036412 -
Tsu02g04161 805 CDD HAD_TPP 469 686 - -
Tsu02g04161 805 Gene3D Glycogen Phosphorylase B; 3 217 - -
Tsu02g04161 805 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 439 - -
Tsu02g04161 805 Gene3D - 558 638 - -
Tsu02g04161 805 MobiDBLite consensus disorder prediction 722 741 - -
Tsu02g04161 805 CDD GT20_TPS 7 436 IPR001830 GO:0003824|GO:0005992
Tsu02g04161 805 MobiDBLite consensus disorder prediction 722 750 - -
Tsu02g04161 805 Pfam Glycosyltransferase family 20 8 436 IPR001830 GO:0003824|GO:0005992
Tsu02g04161 805 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 6 798 - -
Tsu02g04161 805 Pfam Trehalose-phosphatase 474 687 IPR003337 GO:0003824|GO:0005992
Tsu02g04161 805 Gene3D - 471 652 IPR023214 -
Tsu02g04161 805 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 6 798 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04161 Tsu-Chr2 48841523 48848342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04161 6 803 Trehalose Biosynthesis Gene Families AT1G78580 77.396 0.0 1309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04161 K16055 - gmx:100789554 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04161 02 48841523 48848342 Tsu02g04161 02 48841523 48848342 ECH