Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04141 ATGGAAATTGGTTCTTCTTCGGTGCAACTGAATGTGAACGAGGTTGTCAATGGACAGAAATTGAAAGTCCGTGCTGTTAGAAAGAGAAACTATGATCATGAAAATGGCACAACTTGTCATCAGTGCCGACAAAAAAGAAATGTTTTTTGTGCCGCTTGTAAGAATCCAGGAGCTGGGAAGCCTTGCATCCTTAAGTTCTGCCACATGTGCCTCAAGAATAGATATGGAGAAATAGCACAAGAGGTAGATCTGTTGATTGATTGGATGTGTCCTAAATGCCGTGGCATTTGTAACTGCAGTATCTGCATGAAACGAAGGGGTCAACAACCCACTGGTCATCTAGCTTGTAAATCTAAGGCCCGCGGTTTTAACTCTGTTTCTGAAATGCTATGTAAAGAATCTTCTGAAGGTTTGGAACTGAACAATGCAGCTGATTTGCCGATTAAGGAACATAGTTTGGAAAAGGAGCTTGTAGCGAGCCTATCAGAGGAACCTGGGGAGGAAAATTCCTCGGCTGCAACTAATACTTTAAAGGATGGACATGTGACAACCAAAAAAGTGAAACGGGAAATTAAGGAAGAAATTCCTTTTCCCACTGGCATTGACATGAAAACAATACTAGACATGGAGTTCACACAAGAAGATGTTGGGAATGTTTTACAGTTTCTAGAATTCTGTAGAGTATTTGGAAAGGCTCTTGATATCAAGAAAGAAGATGCTGGAGCTATTTTAAGGGCTTTGCGAAGTGGACAAAACACCTTAGTGGTTGAGTTCCAAAGCAAGCTGTTAAATTTGATATCACCTGATTCAGAAATTGAGTCTTCACCCATAACTACGAGTAATGGAAATAATTCATGGTTGAAAGTTCTGGAGGAATTAATTATTGCATCCAATCATGTGCTAAAAGAATTTCCAGTTGATTGGCTTAAAAAAGGCAATAGCGGATATGACGATTTAGACTTCTCAAGAAAGCTCATCCTTCTGAACGTTATCTGCGATGAAGCTCTTGGAACACCGAAGCTAAGGAAGTACATTGATGAACAAAATGGAATATTTACTGAAGAAAAGAAAGCAGCAAAAACAAAGGTTGCTGAAGCTAAGGAAAAGGAAAGAAGTCTTAAACAGAAGTTGAAAGATGAGAAAGCAAAAGCTGTGATATCAAATGATGTTAGCCTTTCAGCAGATGATGCTCTACTTGCAAAGATTAAAAGTGAAGCAGCTGAAGCTCGTGCTGAGTTGATTGAGGCAAAGAGCACATTTCCTAAACGGAACCAATGTTGTGAGACACTGAGAATTGAGAGCGAGTACTTGGATAACAATGGTAAAGCATTTTGGAAAATAAGAAGCTATAGTGATCAAGAAGCTTTCTTGTTACAAgATGTGAAGATCCGTGACGAAGATGCTTCTGAAGTTGATGAAAAATGGTTTGCTTATGCACCTGAGCAGAAGGAAGAGGTCAGCAAGTACATTTCTTCTAGGAGACAGTGA 1488 0.3945 MEIGSSSVQLNVNEVVNGQKLKVRAVRKRNYDHENGTTCHQCRQKRNVFCAACKNPGAGKPCILKFCHMCLKNRYGEIAQEVDLLIDWMCPKCRGICNCSICMKRRGQQPTGHLACKSKARGFNSVSEMLCKESSEGLELNNAADLPIKEHSLEKELVASLSEEPGEENSSAATNTLKDGHVTTKKVKREIKEEIPFPTGIDMKTILDMEFTQEDVGNVLQFLEFCRVFGKALDIKKEDAGAILRALRSGQNTLVVEFQSKLLNLISPDSEIESSPITTSNGNNSWLKVLEELIIASNHVLKEFPVDWLKKGNSGYDDLDFSRKLILLNVICDEALGTPKLRKYIDEQNGIFTEEKKAAKTKVAEAKEKERSLKQKLKDEKAKAVISNDVSLSADDALLAKIKSEAAEARAELIEAKSTFPKRNQCCETLRIESEYLDNNGKAFWKIRSYSDQEAFLLQDVKIRDEDASEVDEKWFAYAPEQKEEVSKYISSRRQ 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04141 495 Coils Coil 356 383 - -
Tsu02g04141 495 PANTHER OS05G0300700 PROTEIN 23 493 IPR040221 GO:0006355
Tsu02g04141 495 Coils Coil 399 419 - -
Tsu02g04141 495 PANTHER OS05G0300700 PROTEIN 23 493 - -
Tsu02g04141 495 MobiDBLite consensus disorder prediction 164 179 - -
Tsu02g04141 495 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 314 346 IPR028942 -
Tsu02g04141 495 MobiDBLite consensus disorder prediction 160 179 - -
Tsu02g04141 495 ProSiteProfiles DDT domain profile. 213 272 IPR018501 -
Tsu02g04141 495 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 31 130 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04141 Tsu-Chr2 48572202 48576682 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tsu02g04141 zf-4CXXC_R1 3.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04141 - - cam:101499057 465.692