Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04123 ATGAAGAAATCCATAGTTATCACCTTTTCGATAACTATATGCTTCATTGCTTTTGTGATATCCAAGATTATAATCTCAATTCTTCTCTACAAAAGATGGAGAAAAAAGCATTTGATTTATGAAGAAGGTTATACAGGAGGGAAGATGGTGATATTTAGGTCTTCGGTCCTTAAATCATTAACAACTGATATGGTGTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATTGGTTCCGGTGGTTATGGTGTAGTTTACGAACTAAAACTGAATGATTCCGCGGCCTTTGCTGTGAAAAGACTGAACCGCGGAACTGCAGAAAGAGATAAAGGTTTTGAGAGAGAGTTACAAGCAATGGCAGACATAAAACATCGCAATGTTGTGACTCTTCATGGATATTACACTGCACCACACTACAATCTTCTCATTTATGAGTTAATGCCTAATGGAAGTTTGGATTCCCTTTTGCATGGGAAATCAATGAACAAGAAGGTTTTGGACTGGCCAACCAGACACAAAATAGCTATAGGTGCAGCAAGAGGGATATCATACCTTCACCATGACTGTATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAATATATTATTGGATCAGAATATGGAAGCTCGAGTTTCGGATTTCGGATTAGCCACATTGATGGAACCAAACAAAACTCATGTCTCAACAATTGTGGCTGGAACTTTTGGATACTTGGCTCCTGAATATTTTGATACAGGAAGAGCGACAGTGAAAGGTGATGTTTATAGTTTTGGAGTTGTGTTACTTGAGCTTTTAACAGGAAAGAAACCTAGTGATGAAACATTTATGGAAGAGGGAACCAAACTTGTCACATGGGTGAAAGCTGTAGTTCAAGAGAAGAAAGAGGAATTAGTTCTTGATAGTAGCTTAGGGTCATGTTGTCCAATGCATGAGGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAACCCGACCCTTTGAATAGACCAACCATGGCCGAGGTTGTTAACTTGCTCGATAAAACACAAACAGATAGACTTGCTACAGAATCCTAA 1068 0.3876 MKKSIVITFSITICFIAFVISKIIISILLYKRWRKKHLIYEEGYTGGKMVIFRSSVLKSLTTDMVLKKTQKLNNKDIIGSGGYGVVYELKLNDSAAFAVKRLNRGTAERDKGFERELQAMADIKHRNVVTLHGYYTAPHYNLLIYELMPNGSLDSLLHGKSMNKKVLDWPTRHKIAIGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPSDETFMEEGTKLVTWVKAVVQEKKEELVLDSSLGSCCPMHEVNKVFNIAMMCLEPDPLNRPTMAEVVNLLDKTQTDRLATES 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04123 355 Gene3D Transferase(Phosphotransferase) domain 1 148 354 - -
Tsu02g04123 355 Pfam Protein kinase domain 74 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04123 355 SMART serkin_6 72 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04123 355 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 348 - -
Tsu02g04123 355 ProSiteProfiles Protein kinase domain profile. 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04123 355 Gene3D Phosphorylase Kinase; domain 1 48 147 - -
Tsu02g04123 355 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Tsu02g04123 355 PANTHER BNAA07G39120D PROTEIN 1 348 - -
Tsu02g04123 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Tsu02g04123 355 SUPERFAMILY Protein kinase-like (PK-like) 61 341 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04123 Tsu-Chr2 48175178 48178480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04123 3 344 Receptor kinase-like Gene Family AT2G35620 45.507 2.57e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Tsu02g04123 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04123 - - ahf:112703495 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04123 02 48175178 48178480 Tsu02g04123 02 48175178 48178480 ECH