Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04119 ATGAGTTTTATGAATCACGTAAGAACCGTTGCCAAAGAAGCATTAGAGCGAACATCAATAATCGCAAAATTCCTATGTTGTCTTCACTTCACAGGCAACTACCTCTGTTCTCCAACACACGCGTATGGACCTAGTATGCTCCCTACCCTAAATATTGCTGGAGATGTTGTTCTTGTTGAACATCTTTCTCCAAGGATTGGGAAAGTTGGTTATGGTGATTTGGTTCTTGTTAGGTCACCTTTGAACCCTAATCGGAATTTGACAAAACGTGTTGTTGCTATGGAAGGGGATACTGTTACTTATTTTGATCCTTTGAATTCTGATTCTTCTCGAATTGCTGTGGTGTGTGTGCTTAATGGTGCCAAAGGGGCATGTTTGGATTCAAGGAGATAA 393 0.4071 MSFMNHVRTVAKEALERTSIIAKFLCCLHFTGNYLCSPTHAYGPSMLPTLNIAGDVVLVEHLSPRIGKVGYGDLVLVRSPLNPNRNLTKRVVAMEGDTVTYFDPLNSDSSRIAVVCVLNGAKGACLDSRR 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04119 130 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 5 115 - -
Tsu02g04119 130 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 5 115 - -
Tsu02g04119 130 CDD S26_SPase_I 43 111 IPR019533 GO:0004252|GO:0006465
Tsu02g04119 130 Gene3D Umud Fragment, subunit A 32 130 - -
Tsu02g04119 130 SUPERFAMILY LexA/Signal peptidase 34 102 IPR036286 -
Tsu02g04119 130 Pfam Signal peptidase, peptidase S26 20 102 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04119 Tsu-Chr2 48124015 48128745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04119 46 115 MADS-box Gene Family AT1G29960 45.070 1.47e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04119 K09647 - csin:114274489 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04119 02 48124015 48128745 Tsu02g04119 02 48124015 48128745 ECH