Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04111 ATGTCGTCGAAGAGAAAGGTTAGAGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTGCTGTTAAAGATGGAGAACATGTTTTTGGTGTTGCTCGTATCTTTGCTTCATTCAACGATACTTTCATTGTGAGTGTTCTtagcttcttttttctttatctaATTCGGGTTATAATtggattatttaatttatttcagcATGTCACTGATTTGTCTGGGAGAGAAACACTTGTCCGCATTACTGGTGGAATGAAGGTTAAAGCTGATAGAGATGAATCATCTCCATATGCTGCTATGCTTGCTGCACAAGATGTCGCTACAAGATGCAAGGAGCTAGGCATAACTGCTCTTCATATCAAGCTCCGTGCAACCGGAGGGAACAAGACGAAAACACCAGGCCCTGGTGCTCAGGCTGCTCTCCGTGCTTTGGCACGTTCTGGAATGAAAATTGGTCGCATAGAGGATGTGACCCCAATTCCTTCAGACAGTACTCGCAGAAAGAGTGGTAGAAGAGGTAGAAGGCTCTGA 525 0.4171 MSSKRKVREPKEETVTLGPAVKDGEHVFGVARIFASFNDTFIVSVLSFFFLYLIRVIIGLFNLFQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04111 174 ProSitePatterns Ribosomal protein S11 signature. 139 161 IPR018102 -
Tsu02g04111 174 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 2 42 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tsu02g04111 174 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 63 174 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tsu02g04111 174 SUPERFAMILY Translational machinery components 26 170 - -
Tsu02g04111 174 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 1 47 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tsu02g04111 174 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 51 171 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tsu02g04111 174 PANTHER BNAA05G27530D PROTEIN 2 42 - -
Tsu02g04111 174 Gene3D Ribosomal protein S11 1 45 IPR036967 GO:0003735|GO:0005840|GO:0006412
Tsu02g04111 174 Gene3D Ribosomal protein S11 52 174 IPR036967 GO:0003735|GO:0005840|GO:0006412
Tsu02g04111 174 Pfam Ribosomal protein S11 58 170 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tsu02g04111 174 MobiDBLite consensus disorder prediction 153 174 - -
Tsu02g04111 174 Hamap 30S ribosomal protein S11 [rpsK]. 4 171 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tsu02g04111 174 PANTHER BNAA05G27530D PROTEIN 63 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04111 Tsu-Chr2 47870227 47871862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04111 3 163 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 77.019 4.36e-85 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04111 K02955 K01000 gmx:100786325 245.743