Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04088 AtggcatcatcatcatcagccCCTCAAGTCATAACTTGCAAAGcTGCAGTGGCATGGGGAGCTGGAGAGGCATTGGTAATGGAAGAAGTGGAAATCAGTCCTCCACAACCATTGGAGATTAGGATTAaggttgtctctacctctatcTGTTGTAGCGATCTTGCTGCTTGGAAACATCATACCATATTTCCTCGCATATTTGGCCATGAAGCATCTGGGGTTGTTGAGAGTGTAGGGCAAGGAGTGACAGAATTCAAAGAAGGGGACCATGTGTTAACAGTTTTCCTTGGAGAATGCATGTCATGTAAGATGTGCAAATCCGGAAAGAGTACTATTTGTCAAGTTTTGGGATTCGAAAGAAAGGGTTTAATGCATAGCGATCAAAAGACGAGATTCATGTTTAAAGGGAAGCCTGTTTATCATTATTGTGCAGTTTCAAGTTTTAGTGAATATACAGTAGTCCATTCTGGATGTGCAGTGAAAATCAGTCCTCATGTACCTCTTGAGAAAGTATGCCTTCTCAGCTGTGGTGTTGCTGCAGGTATAGGTGCAGCATGGAATGTTGCTGATGTATCAAAAGGATCAACAGTGGTTATATTTGGTCTTGGAACTGTTGGACTTTCTGTTGCTCAAGGTGCCAAACTAAGGGGTGCATCTAGAATAATAGGTGTTGACAATAATCCAAGGAAGTGCGAAAATGCGAAAGCATTTGGGATTACAGAAGTTGTTGATCCGAATTCGTGCCAAAAACCTATCGCGCAGGTTATAAAGGGCATTACTGATGGTGGGGCAGATTTCTGTTTTGAATGTGTAGGTGACAGTGATATGTTAACCACTGCATTGGAGTCATGTTGTGATGGATGGGGTGTGACTGTAGCACTTGGTGTGCCAAGGCTGAAGCCTAAGATGTCAGCTCATTATTCTCTATTCCTAAAAGGAAGAACATTAAAAGGATCTATATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTGGTAGAGAAGTATATGAATAAGgaAATCCAGATTGATGATTACATAACACACAATTTGCCATTTGATGACATTAACAAAGCTTTCAATCTCATGACAGAAGGAAAGTGTCTTCGTTGTGTTATTCACATTCCAAGATAA 1137 0.3914 MASSSSAPQVITCKAAVAWGAGEALVMEEVEISPPQPLEIRIKVVSTSICCSDLAAWKHHTIFPRIFGHEASGVVESVGQGVTEFKEGDHVLTVFLGECMSCKMCKSGKSTICQVLGFERKGLMHSDQKTRFMFKGKPVYHYCAVSSFSEYTVVHSGCAVKISPHVPLEKVCLLSCGVAAGIGAAWNVADVSKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPRKCENAKAFGITEVVDPNSCQKPIAQVIKGITDGGADFCFECVGDSDMLTTALESCCDGWGVTVALGVPRLKPKMSAHYSLFLKGRTLKGSIFGGWKPKSDLPSLVEKYMNKEIQIDDYITHNLPFDDINKAFNLMTEGKCLRCVIHIPR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04088 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Tsu02g04088 378 SUPERFAMILY GroES-like 327 375 IPR011032 -
Tsu02g04088 378 Pfam Zinc-binding dehydrogenase 205 326 IPR013149 -
Tsu02g04088 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 340 IPR036291 -
Tsu02g04088 378 Gene3D - 181 319 - -
Tsu02g04088 378 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 7 376 - -
Tsu02g04088 378 SUPERFAMILY GroES-like 7 185 IPR011032 -
Tsu02g04088 378 Gene3D - 16 371 - -
Tsu02g04088 378 Pfam Alcohol dehydrogenase GroES-like domain 39 160 IPR013154 -
Tsu02g04088 378 PANTHER ALCOHOL DEHYDROGENASE 7 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04088 Tsu-Chr2 47530903 47535142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04088 16 113 Monolignol Biosynthesis Gene Families AT2G21890 35.238 8.45e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04088 K00001 - gmx:100819938 676.396