Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03981 ATGACCTGTTTCCCTTTCTCGTTCAGCAAgaaatcatcttcttcattgcCTTCTAGAAGACCGAATCTAGACAATGATGAAGATGATATGTCAAGCATTCAGAATGTTAAGATCTATACCTACAAAGAACTAAGGAATGCCACTGATAACTTTAGCGCGGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACATGGGTCGACTTAAAGATGGAAAACTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAAACAAGGTGTGAAGGAGTTCTTGACAGAGATCAACGTGATCTCCGAAATAGAGCACGAAAATTTGGTCAAGTTATATGGTTGTTGCGTGGAAAAAAATAGCAGGATTTTAGTCTACAATTACCTTGAAAATAACAGCCTTTCACGAACTCTTCTAGGTGGAAGTCATGATAGTATCTACTTTGATTGGCGAACGCGATGTAGAATAGGTGTTGGGGTTGCACGCGGGCTTGCCTTTCTACACGAAGAAGTCAGGCCTCTTATCATTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCCAAGATATCCGATTTCGGTCTTGCGAAGCTATTGCCAGCAAATGCGACTCATGTCAGCACACGTGTAGCAGGAACACTAGGTTATTTGGCTCCAGAGTATGCGATAGGAGGGAGGCTTACACGAAAAGCAGACATTTACAGTTTCGGTGTCCTCCTTATCGAGATAGTCAGTGGGAGATGCAACACAAATTCGCGACTTCCAATAGAAGAACAATTCATTCTAGAGAGGACATGGGAACTTTACGAGCGAAAGGAATTAGTTGCGCTGGTAGATACATCACTAAACGGGGACTTCGACGCCGAGCAGGCCTGTAAGTTTCTGAAGATTGGCCTTCTTTGCACTCAGGAATCTCCGAAGTGCCGGCCATCCATGTCTACTGTGGTCAAGATGCTTACAGGAGAGATGGAAGTTGATGACAGTAAGATGACAAAACCTGCCTTAATTTCTGATTTCATGGACCTCAAAGTTAGACATAAACAAGAAAGTATAATCGATACGAGGAATTCATCTTCATATAATACATCATCGTCTACCTCAGAACATCAGGACACTACTGTTATATCAGCTGCAACTTCAACCTTCACTACACAACATGATCACAGCATGTAA 1182 0.4137 MTCFPFSFSKKSSSSLPSRRPNLDNDEDDMSSIQNVKIYTYKELRNATDNFSAANKIGEGGFGSVYMGRLKDGKLAAIKVLSAESKQGVKEFLTEINVISEIEHENLVKLYGCCVEKNSRILVYNYLENNSLSRTLLGGSHDSIYFDWRTRCRIGVGVARGLAFLHEEVRPLIIHRDIKASNILLDKDLTPKISDFGLAKLLPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLIEIVSGRCNTNSRLPIEEQFILERTWELYERKELVALVDTSLNGDFDAEQACKFLKIGLLCTQESPKCRPSMSTVVKMLTGEMEVDDSKMTKPALISDFMDLKVRHKQESIIDTRNSSSYNTSSSTSEHQDTTVISAATSTFTTQHDHSM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03981 393 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 382 - -
Tsu02g03981 393 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g03981 393 CDD STKc_IRAK 57 324 - -
Tsu02g03981 393 ProSiteProfiles Protein kinase domain profile. 51 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03981 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Tsu02g03981 393 MobiDBLite consensus disorder prediction 356 375 - -
Tsu02g03981 393 PANTHER - 2 382 - -
Tsu02g03981 393 SUPERFAMILY Protein kinase-like (PK-like) 27 322 IPR011009 -
Tsu02g03981 393 Gene3D Phosphorylase Kinase; domain 1 22 126 - -
Tsu02g03981 393 Pfam Protein kinase domain 53 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03981 393 SMART serkin_6 51 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03981 393 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Tsu02g03981 393 Gene3D Transferase(Phosphotransferase) domain 1 127 340 - -
Tsu02g03981 393 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03981 Tsu-Chr2 46262465 46264600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03981 39 330 Receptor kinase-like Gene Family AT1G07650 55.973 1.17e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g03981 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03981 - - gmx:100782320 599.356