LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g03975	ATGACTATTGTTACTGAGTTCAATCAAATACAAGAAATTAACACTGACAAAACATTTTGGAACATTAAGGCAAAAATAATTAGACTATGGCAAGTAACTGATTTCAATAACCCTAGAGTTCCTTTTTCTGTTGAAATGATTTTGATGGATTCCGATGGCGGAAGAATCCATGCCACCATCAGAAAAACTTTgctttataaatttaaaaatgatgtTTTAGAAGGTAAGACTTATGCTTTTGAAAAAATGGGTGTCGCTTCTAATGGTGGTGGTTATAGAACCACTACACACCCTTTCAAACTGAACTTTCAATACTCTTCTGTTGTTCAACATTTGCCTAACTTGAGAATCACAACATCACCTTACAAATTTGTTCCGATCTCTGACATTGTTGGTGGGGGTTATGACACCGATTATTTGCCCGATGTTATTGGTGTCTTAACTGGTGTTGGGAGTGAAAGAGAGATTGAGAAGAATGGTGGAACTACTAGGCTCAATGTTATTGCTCTTGAGGTTGATGGCTACAAAATCCAGTGTACATTGTTTGGGAGCTATTGTGATGACCTCAATAGTTTCATTGCTACTGGAGATGTCCATAATGCAGTTTTCATTATTCAACTTGCGAAAGCAAAAACTTTTCAAGAAGCTAGGGCTTTGAAGAGCAGGTTTGCTGACGATGAGAATACACCATCTCCAATGACCTTAACCCAACTTACTTATGAGGATTCATTGTTTGTAGTTCTTGGAACTATAAAAAAGATCTTGGACCCTGATAGTTATTCTTACACTTCTTGCTCATGCTCCAAAGTTGTAATCCCTGATTCACAAATGTGGTTTTGTGAAAAGTGTGATAAACATGTCATGAGGGTTACCCCTAGGTTTTGCATCAAAGTGAGGGTGTTAGACAATACCGATTGTGGGACTATGGTTATATTTGACAATGATGCGTCTCTTCTCATTCACAAGTCTTGCCAAGCTGTCCTGGATTCCATTCCTAGAGGTGTTGCTGATGGCTTTCTGCCAAATGAAATTGTTGGTTTGGTTGGTCAGACCTTGCTCTTCAAAGTAGAGACCAAAGCCAAGTTTAATACCAAGTTTGAACAATCATTCCGTGATAGAAAAATCTGTGCATATGCTAATGTTATCAGGAAAACACTTTTGTTGGAAGGATCTTCTGTTGGCATATCACAAGATATTGTTTGTCTCTCTTCACCAAATCTTAAGCTTAAAGACAAAGTTGGTGAGCATGCTGCAGTTATTAAAGAGGATTTGATGCCAAAATTTGGTGAGGCTGTTGTAAGTTGTGATGAAAAATCACCAAGTGATTTTCAAGCTAAGAGGACTTCCCCGGTTAACCTAAATGATGATGATATGGATTTGCCATTGAAATTGCTAAAAAGAAGTATTAAGATTGAAAAACTCTAG	1425	0.3705	MTIVTEFNQIQEINTDKTFWNIKAKIIRLWQVTDFNNPRVPFSVEMILMDSDGGRIHATIRKTLLYKFKNDVLEGKTYAFEKMGVASNGGGYRTTTHPFKLNFQYSSVVQHLPNLRITTSPYKFVPISDIVGGGYDTDYLPDVIGVLTGVGSEREIEKNGGTTRLNVIALEVDGYKIQCTLFGSYCDDLNSFIATGDVHNAVFIIQLAKAKTFQEARALKSRFADDENTPSPMTLTQLTYEDSLFVVLGTIKKILDPDSYSYTSCSCSKVVIPDSQMWFCEKCDKHVMRVTPRFCIKVRVLDNTDCGTMVIFDNDASLLIHKSCQAVLDSIPRGVADGFLPNEIVGLVGQTLLFKVETKAKFNTKFEQSFRDRKICAYANVIRKTLLLEGSSVGISQDIVCLSSPNLKLKDKVGEHAAVIKEDLMPKFGEAVVSCDEKSPSDFQAKRTSPVNLNDDDMDLPLKLLKRSIKIEKL	474

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g03975	474	SUPERFAMILY	Nucleic acid-binding proteins	239	360	IPR012340	-
	Tsu02g03975	474	PANTHER	REPLICATION FACTOR A 1, RFA1	24	328	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Tsu02g03975	474	Pfam	Replication factor-A C terminal domain	246	328	IPR013955	-
	Tsu02g03975	474	Gene3D	-	215	378	IPR012340	-
	Tsu02g03975	474	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	24	328	-	-
	Tsu02g03975	474	CDD	RPA1_DBD_C	245	359	IPR013955	-
	Tsu02g03975	474	Pfam	Domain of unknown function DUF223	45	140	IPR003871	-
	Tsu02g03975	474	Gene3D	-	5	111	IPR012340	-
	Tsu02g03975	474	CDD	RPA1_DBD_B_like	142	221	-	-
	Tsu02g03975	474	CDD	RPA1_DBD_A_like	22	109	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g03975	Tsu-Chr2	46176969	46179543	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g03975	10	312	Core DNA Replication Machinery Family	AT2G06510	21.884	1.24e-12	68.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g03975	-		-	mtr:MTR_4g036240	443.351

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