Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03975 ATGACTATTGTTACTGAGTTCAATCAAATACAAGAAATTAACACTGACAAAACATTTTGGAACATTAAGGCAAAAATAATTAGACTATGGCAAGTAACTGATTTCAATAACCCTAGAGTTCCTTTTTCTGTTGAAATGATTTTGATGGATTCCGATGGCGGAAGAATCCATGCCACCATCAGAAAAACTTTgctttataaatttaaaaatgatgtTTTAGAAGGTAAGACTTATGCTTTTGAAAAAATGGGTGTCGCTTCTAATGGTGGTGGTTATAGAACCACTACACACCCTTTCAAACTGAACTTTCAATACTCTTCTGTTGTTCAACATTTGCCTAACTTGAGAATCACAACATCACCTTACAAATTTGTTCCGATCTCTGACATTGTTGGTGGGGGTTATGACACCGATTATTTGCCCGATGTTATTGGTGTCTTAACTGGTGTTGGGAGTGAAAGAGAGATTGAGAAGAATGGTGGAACTACTAGGCTCAATGTTATTGCTCTTGAGGTTGATGGCTACAAAATCCAGTGTACATTGTTTGGGAGCTATTGTGATGACCTCAATAGTTTCATTGCTACTGGAGATGTCCATAATGCAGTTTTCATTATTCAACTTGCGAAAGCAAAAACTTTTCAAGAAGCTAGGGCTTTGAAGAGCAGGTTTGCTGACGATGAGAATACACCATCTCCAATGACCTTAACCCAACTTACTTATGAGGATTCATTGTTTGTAGTTCTTGGAACTATAAAAAAGATCTTGGACCCTGATAGTTATTCTTACACTTCTTGCTCATGCTCCAAAGTTGTAATCCCTGATTCACAAATGTGGTTTTGTGAAAAGTGTGATAAACATGTCATGAGGGTTACCCCTAGGTTTTGCATCAAAGTGAGGGTGTTAGACAATACCGATTGTGGGACTATGGTTATATTTGACAATGATGCGTCTCTTCTCATTCACAAGTCTTGCCAAGCTGTCCTGGATTCCATTCCTAGAGGTGTTGCTGATGGCTTTCTGCCAAATGAAATTGTTGGTTTGGTTGGTCAGACCTTGCTCTTCAAAGTAGAGACCAAAGCCAAGTTTAATACCAAGTTTGAACAATCATTCCGTGATAGAAAAATCTGTGCATATGCTAATGTTATCAGGAAAACACTTTTGTTGGAAGGATCTTCTGTTGGCATATCACAAGATATTGTTTGTCTCTCTTCACCAAATCTTAAGCTTAAAGACAAAGTTGGTGAGCATGCTGCAGTTATTAAAGAGGATTTGATGCCAAAATTTGGTGAGGCTGTTGTAAGTTGTGATGAAAAATCACCAAGTGATTTTCAAGCTAAGAGGACTTCCCCGGTTAACCTAAATGATGATGATATGGATTTGCCATTGAAATTGCTAAAAAGAAGTATTAAGATTGAAAAACTCTAG 1425 0.3705 MTIVTEFNQIQEINTDKTFWNIKAKIIRLWQVTDFNNPRVPFSVEMILMDSDGGRIHATIRKTLLYKFKNDVLEGKTYAFEKMGVASNGGGYRTTTHPFKLNFQYSSVVQHLPNLRITTSPYKFVPISDIVGGGYDTDYLPDVIGVLTGVGSEREIEKNGGTTRLNVIALEVDGYKIQCTLFGSYCDDLNSFIATGDVHNAVFIIQLAKAKTFQEARALKSRFADDENTPSPMTLTQLTYEDSLFVVLGTIKKILDPDSYSYTSCSCSKVVIPDSQMWFCEKCDKHVMRVTPRFCIKVRVLDNTDCGTMVIFDNDASLLIHKSCQAVLDSIPRGVADGFLPNEIVGLVGQTLLFKVETKAKFNTKFEQSFRDRKICAYANVIRKTLLLEGSSVGISQDIVCLSSPNLKLKDKVGEHAAVIKEDLMPKFGEAVVSCDEKSPSDFQAKRTSPVNLNDDDMDLPLKLLKRSIKIEKL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03975 474 SUPERFAMILY Nucleic acid-binding proteins 239 360 IPR012340 -
Tsu02g03975 474 PANTHER REPLICATION FACTOR A 1, RFA1 24 328 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu02g03975 474 Pfam Replication factor-A C terminal domain 246 328 IPR013955 -
Tsu02g03975 474 Gene3D - 215 378 IPR012340 -
Tsu02g03975 474 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 24 328 - -
Tsu02g03975 474 CDD RPA1_DBD_C 245 359 IPR013955 -
Tsu02g03975 474 Pfam Domain of unknown function DUF223 45 140 IPR003871 -
Tsu02g03975 474 Gene3D - 5 111 IPR012340 -
Tsu02g03975 474 CDD RPA1_DBD_B_like 142 221 - -
Tsu02g03975 474 CDD RPA1_DBD_A_like 22 109 - -
Tsu02g03975 474 SUPERFAMILY Nucleic acid-binding proteins 6 115 IPR012340 -
Tsu02g03975 474 SUPERFAMILY Nucleic acid-binding proteins 122 221 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03975 Tsu-Chr2 46176969 46179543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03975 10 312 Core DNA Replication Machinery Family AT2G06510 21.884 1.24e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03975 - - mtr:MTR_4g036240 443.351