Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03973 ATGGATATAGACACTGCAAGTATTCAGCCAGTAGTAGTAGATACTGGAAGCAAGCAAGAAGAAGGTTCAGAGGAGAACAAGGCTAAGGATGAAAAAACCAATACAGTACCTTTATACAAGCTTTTCTCATTTTCTGATTCTTTGGATCATTTATTGATGTTTGTTGGGACTATTGGTGCTATTGGGAATGGAATCTCCCCGCCCTTGATGACTTTATTATTTGGAAACATGATCAATGCATTTGGAGGATCATCAAGCACCAAAGAACTTGTTGATGAAGTTTCCAAGGTGGCCTTGAAATTCGTATACTTGGCTGCGGGTACCTTTGTTGCGTCTTTTTTGCAACTGACTTGCTGGATGATCACTGGTGAGAGACAGGCTGCAAGAATTAGAGGTTTATACCTACAAACTATTTTGAGGCAGAATGTGAGTTTCTTTGATAAGGAAACTAATACCGGAGAGGTTGTTGGAAGAATGTCTGGTGATACCGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAATTTCTACAATTAGTGGCTACATTCTTTGGAGGTTTTGTTGTAGCATTCATCAACGGATGGCTTTTAACCGTTGTCATGACGTCTTGTATTCCACTTCTTGTCTTGTTTGGTGCCATGATGAGCATGGTTATTACAAAATCATCATCCAGTGGACAAACAGCTTATTCTAAAGCAGCAACAGTAGTAGAGCAGACAATTGGTTCTATCAGAACTGTTGCGTCGTTCACCGGAGAGAAACAAGCCATAGCTAAATATGACCAGTCCTTGATTGATGCTTACAAAACTGTAGTGAAAGAGGCCCTAGCTTCTGGTTTAGGGTTTGGTTCACTCTACTTTGTTGTTATTGCTAGTTATGGTTTGGCAGTATGGTTTGGTGGAAAAATGATAATAGAGAAAGATTATACAGGAGGGGAAGTTGTGACTATTATTTTTGCTGTATTGACTGGATCCATGTCTCTGGGAGAGACATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCATTTAAAATGTTTGAAACGATTAAACGGAAGCCGGAAATTGATGCTTATGACACAACCGGGCGAAAGCTTGATGATATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGGCCAGATGAACTGATATTCAATGGATTTTCTCTTACAATACCAAGTGGGACTACTGTAGCTTTGGTAGGGGAAAGTGGGAGTGGAAAATCCACAGTTGTCAGTTTGATAGAGAGATTTTACAATCCACAAGTTGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAACTTAAATGGATCCGACAAAAAATTGGCCTAGTCAGTCAGGAACCAGTACTCTTTACTTGTAGCATTAAGGAGAATATTGCCTATGGTAAGGATGGTGTGACCGATGATGAAATCAGAGCTGCAGCAGAACTTGCTAATGCCGCCAAATTTATAGATAAACTTCCTCAGGGACTAGATACAATGGTTGGTGAGCATGGAACTCAGCTCTCCGGAGGTCAAACGCAAAGAGTTGCAATTGCAAGAGCAATTCTGAAAGATCCAAGAATCCTTCTTCTTGATGAAGCTACAAGTGCGCTTGATGCAGAATCTGAAAGAGTAGTACAAGAGGCATTGGACAGAATAATGGTAAACCGAACAACTGTCATTGTAGCTCACCGCTTAAGTACCATAAAGAATGCTGATACCATTGCTGTTATTCATCaaggaaaaataattgaaagagGTTCACATGCTCATCTCACAAGGGACCCCGATGGAGCCTATAGCCAGCTCATTAGGCTGCAAGAAATGAAGGGGTCAGAACAGAATGTTGCAAATGACACAAACAAGTCAAACAGTATAGTGTTATCTGAAAGACAATCTAGTCATAGATCTTTATCGTTGAGATCTATAAGTCAAGTGTCATCTGGAAGTGGAGACAGCGGTCATCACTCATTCACAGCGTCATTTGGTGTGTCGACCACAATTGTTGGCTTCTCAGAAACCGCAGATGGTGGAACTCAAGCTCCTCCTTCTAAAGTTTCATCAGCACCAGAAGTGCCAGTTTATCGCCTGGCCTATTTAAACAAGCCAGAAGTTCCAGCCTTACTTATAGGGACAATCGCTGCAGCACTTCACGGTGTAATACTATCGGTTTTCGGCCTCTTGCTTTCGAAAATGACAAGTATTTTCTACGAGCCAGCTGACGAACTTCGTCATGATGCAAAGGTTTGGGCGTCAGTATTTGTTGGGCTTGGTGTTGCGTCATTATTCATTTTTCCAATTAGATTCTACTTTTTTGGCATTGCTGGTGGTAAGTTGATCAAAAGAATAAGGAAAATGTGTTTTGAGAAGGAAATTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCAATTGGAGCAAGGCTCTCAACCGATGTAGCTTCGATTCAAGCTTTGGTTGGTGATGCACTCGGTTTACTCGTTGAAAATATTGCTACAGCTATAGCTGGCTTGGTAATTGCTTTTGTAGCCAGCTGGCAGCTTGCTCTTGTAATCCTTGCTATGGTGCCTCTACTAGCACTTGATGGATTTTTGCAAGTGAAGTTCTTGAAAGGGTTCAGCAATGAttcaaagAAATTGTATGAGGAAGCAAGTCAAGTGGCGAACGATGCAGTGGGAAGTATAAGAACAGTTGCTTCTTTCTGTTCTGAAGAAAAGGTGATGGgcctatataagcaaaaatgcgAGGGACCGATTAAGACAGGCATAAGGCGAGGAATAGTCAGCGGATTTGGTTTTGGGATATCATTCTTCGTGTTGTATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCGCGTCTCGTTGAGGATGGAAAATCTTCATTCTCAGACGTTTTTCGTGTATTTTTTGCTCTAAGCATGGCAGCTATAGGACTCTCTCAATCCGGGAAATCACTCATAGATCCAAATGATGAATCAGGAATGACATTGGAAGAACTCAAGGGAGAAATTGAGTTGAACCATGTCAGTTTCAAGTATCCTATTAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACTATTCACAGTGGCAAGACTGTTGCACTCGTTGGAGAAAGTGGAAGCGGAAAATCAACATTGATCTCGTTAATACAAAGATTTTATGATCCAGATTCAGGTCACATTACACTTGATGGAAAAGAAATCCAAAGTCTACAAGTGAAATGGTTAAGGCAACAAATGGGTCTAGTAAGCCAAGAGCCAGTTCTTTTCAATGATACCATCAGAGCCAATATTGCATATGGAAAAGGAGATGCATCAGAAGCAGAGATTATAGCTGCAGCAGAATTAGCAAATGCTCACAAGTTTATTAGTAGTTTACAAAAGGGTTATGATACAATAGTAGGAGAGAGAGGTGTTCAATTATCCGGGGGGCAGAAACAGCGTGTGGCAATTGCGAGAGCTATAGTGAagaatccaaaaataatattactagATGAAGCAACTAGTGCACTTGATGCGGAGTCTGAGAAGGTGGTTCAAGATGCACTTGACCGTGTTATGGTGGAGCGAACAACAATAATAGTAGTTTATAGGTTATCGACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTTTTATAGCAGAGAAAGGAAAACATGAAGCATTGCTCCATAAGGGTGGTGACTATGCTTCTTTAGTAGCATTACACATAAGTGCTTCTGCATCTTAG 3777 0.4043 MDIDTASIQPVVVDTGSKQEEGSEENKAKDEKTNTVPLYKLFSFSDSLDHLLMFVGTIGAIGNGISPPLMTLLFGNMINAFGGSSSTKELVDEVSKVALKFVYLAAGTFVASFLQLTCWMITGERQAARIRGLYLQTILRQNVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFLQLVATFFGGFVVAFINGWLLTVVMTSCIPLLVLFGAMMSMVITKSSSSGQTAYSKAATVVEQTIGSIRTVASFTGEKQAIAKYDQSLIDAYKTVVKEALASGLGFGSLYFVVIASYGLAVWFGGKMIIEKDYTGGEVVTIIFAVLTGSMSLGETSPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPDELIFNGFSLTIPSGTTVALVGESGSGKSTVVSLIERFYNPQVGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGVTDDEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQTQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTIKNADTIAVIHQGKIIERGSHAHLTRDPDGAYSQLIRLQEMKGSEQNVANDTNKSNSIVLSERQSSHRSLSLRSISQVSSGSGDSGHHSFTASFGVSTTIVGFSETADGGTQAPPSKVSSAPEVPVYRLAYLNKPEVPALLIGTIAAALHGVILSVFGLLLSKMTSIFYEPADELRHDAKVWASVFVGLGVASLFIFPIRFYFFGIAGGKLIKRIRKMCFEKEIHMEVSWFDEAEHSSGAIGARLSTDVASIQALVGDALGLLVENIATAIAGLVIAFVASWQLALVILAMVPLLALDGFLQVKFLKGFSNDSKKLYEEASQVANDAVGSIRTVASFCSEEKVMGLYKQKCEGPIKTGIRRGIVSGFGFGISFFVLYAVYACSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGLSQSGKSLIDPNDESGMTLEELKGEIELNHVSFKYPIRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTLISLIQRFYDPDSGHITLDGKEIQSLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDASEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKIILLDEATSALDAESEKVVQDALDRVMVERTTIIVVYRLSTIKGADLIAVVKNGFIAEKGKHEALLHKGGDYASLVALHISASAS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03973 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 716 992 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g03973 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 53 337 - -
Tsu02g03973 1258 SUPERFAMILY ABC transporter transmembrane region 40 360 IPR036640 GO:0005524|GO:0016021
Tsu02g03973 1258 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 19 1254 - -
Tsu02g03973 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1015 1251 IPR003439 GO:0005524
Tsu02g03973 1258 SMART AAA_5 403 575 IPR003593 -
Tsu02g03973 1258 SMART AAA_5 1042 1234 IPR003593 -
Tsu02g03973 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 614 IPR027417 -
Tsu02g03973 1258 PANTHER - 19 1254 - -
Tsu02g03973 1258 Pfam ABC transporter 395 543 IPR003439 GO:0005524
Tsu02g03973 1258 Gene3D - 1005 1256 IPR027417 -
Tsu02g03973 1258 ProSitePatterns ABC transporters family signature. 1154 1168 IPR017871 GO:0005524
Tsu02g03973 1258 Gene3D ABC transporter type 1, transmembrane domain 99 992 IPR036640 GO:0005524|GO:0016021
Tsu02g03973 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 705 993 - -
Tsu02g03973 1258 Pfam ABC transporter 1035 1182 IPR003439 GO:0005524
Tsu02g03973 1258 CDD ABC_MTABC3_MDL1_MDL2 1015 1249 - -
Tsu02g03973 1258 Pfam ABC transporter transmembrane region 53 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g03973 1258 Pfam ABC transporter transmembrane region 715 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g03973 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1251 IPR027417 -
Tsu02g03973 1258 SUPERFAMILY ABC transporter transmembrane region 703 994 IPR036640 GO:0005524|GO:0016021
Tsu02g03973 1258 Gene3D - 374 627 IPR027417 -
Tsu02g03973 1258 CDD ABC_MTABC3_MDL1_MDL2 376 614 - -
Tsu02g03973 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 612 IPR003439 GO:0005524
Tsu02g03973 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03973 Tsu-Chr2 46143948 46149493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03973 13 620 Calmodulin-binding Proteins AT2G36910 35.843 3.35e-114 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03973 K05658 - gmx:100800293 1924.44