Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03955 ATGGTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTCGGTGGATGCACAGTTGCTTTGTACAACTCGCTTCCTTCTCAATTACCACGTCTTTTCAACATCGATGAACCAATGATGTTCATGGGAGCCGATGTGACACATCCTCATCCTCTCGACGATTCGAATCCATCTGTTGCTGCTGTTGTCGCTAGCATGAATTGGCCAACAGCAAACAAATATATTTCAAGAATAAGGTCTCAAACCCATAGACAAGAAATCATCGCAGATCTCAGTGCAATGGTTGGAGAATTGCTTGACGATTTTTATCAAGAAGTAGAAAAACTCCCCAACAGAATAATTTTCTTCCGAGACGGTGTTGGCGAAACTCAATTTCGCAAAGTGCTTCAAGAGGAACTTGAATCCATAAAACAAGCATGTTCATCAAGGTTTAATgGGACTGTGGTTGATTCTGTGATTACTCATCCAAAGGAATTTGATTTCTATCTGTGCAGTCATTGGGGTGTGAAGGGAACAAGTAGGCCAACTCATTACCATGTTTTGTGGGATGAAAATCAGTTCACTTCAGATGAACTGCATAAGCTTGTTTACAATTTGTGCTTTACTTTTGTTAGAATCACAGGTATGACTTTGAACGTAAGGGTTAGTAAAACTGAAAGAATCGTTGCCGGAAACGCTGGATATTGTAATCCAAAGAAGCGCCATTTCAGAGCTGATAATACTGAAtattATAGTGCACAAGTTTATGAGGTTTCTAGATATCCCTCACCAAGTCTCTGCAAATATTGGGTGAACGACAGCTGTGTTGATGGTGATCAGTGCCGAAATTTACATTTGTGGTTTTACGGTGATGGGTTTACCACAATAGCAAAGCTTCAAGGACACAAGAAGCTTATCACTGGAATGACAATTCGGACAAACTTTATACTGGCAGCACTGACGGGACAGTTCGGACATGGGATTACCACACTGGACAATGTGTTAATGTGGCAAATCTTGGCAGCGAAGTTACCTCTTTGA 1017 0.409 MVANLALKINAKVGGCTVALYNSLPSQLPRLFNIDEPMMFMGADVTHPHPLDDSNPSVAAVVASMNWPTANKYISRIRSQTHRQEIIADLSAMVGELLDDFYQEVEKLPNRIIFFRDGVGETQFRKVLQEELESIKQACSSRFNGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELHKLVYNLCFTFVRITGMTLNVRVSKTERIVAGNAGYCNPKKRHFRADNTEYYSAQVYEVSRYPSPSLCKYWVNDSCVDGDQCRNLHLWFYGDGFTTIAKLQGHKKLITGMTIRTNFILAALTGQFGHGITTLDNVLMWQILAAKLPL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03955 338 PANTHER PROTEIN ARGONAUTE 7 145 206 - -
Tsu02g03955 338 PANTHER PROTEIN ARGONAUTE 7 2 141 - -
Tsu02g03955 338 Pfam Piwi domain 144 209 IPR003165 GO:0003676
Tsu02g03955 338 Pfam Piwi domain 1 141 IPR003165 GO:0003676
Tsu02g03955 338 SMART Piwi_a_2 1 230 IPR003165 GO:0003676
Tsu02g03955 338 Gene3D - 144 253 IPR036397 GO:0003676
Tsu02g03955 338 Gene3D - 32 143 IPR036397 GO:0003676
Tsu02g03955 338 SUPERFAMILY Ribonuclease H-like 3 207 IPR012337 -
Tsu02g03955 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 145 206 - -
Tsu02g03955 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 141 - -
Tsu02g03955 338 ProSiteProfiles Piwi domain profile. 1 214 IPR003165 GO:0003676
Tsu02g03955 338 ProSiteProfiles Zinc finger C3H1-type profile. 253 280 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03955 Tsu-Chr2 45867195 45870718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03955 2 206 Eukaryotic Initiation Factors Gene Family AT1G48410 45.312 1.11e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03955 K11593 - gmx:100797755 360.147