Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03941 ACTTTGATGATAAGACAAATCAATGGAAGTGGCAGTGCGTTAACATTGAAGTGCAGAAAAATGTACTTCGATCAATTACTGCTTTTCTTGATTCTATATCTGCTGATGCACGTGCCACACGTCATACAATTGTTAAGGAATCTGCTGCTGATACTTTTGGGAGCATTGTTATGGATTCTTCAATGCAAAAATGAGCCCTTGTTAAGCATGGCATCAAATGTGGCAGTGAAGTTAGTTAGTGTTTTACCTAGTCAACTATTGCAATTGCGTATGTTGGATCTTGTCTACTGTCTATCATCTTTGCTATCTTCACATCAAGTAGAAGTTGCAATACCATGTGCTACTGCTTTGAATTCGATTATCTCAAATCTGAATGCTACAAGCGAGAAGGCAGTTATTGAAGCACTGAAAGAAACAGAGATTTCCATTTGCATTGTTCGAAATATTAAAGACTGCAGTGCGaagaaaattgaatattttgtgGAGATGGCTTCACTTTTAAGCACAATTCTGTTAAGGTGGTCTTCATCTAGGTTCCCTGTTTGTAATGATGATGAACTTATGAAAGTTTTAGCAAACATGCATACAAAAAAAGATAGTTCTATTAAACTTGTTCTTCTAAAGCTGTACACATCTTTAGCTTTATGTGATTCTGTAGCGCAAAAACTTATAGAGGATGGAGAAGTGTTTATGCAAATGATTGTGCAGGCGATGGGAAAATCAAACCCTCATGATGTTCGGATAGAGGGGTTTCGGCTTGCTCAATGTCTATTGAGATCCCAAGAAAATTGTTTAAAAGTGATGGATTTGTGTGGTGAAGCTCTTGTTGATGCCATAATTTGTGGGATGAGAGAAACAGGGCCGTGTTCCAAAAAAATTGAGAACAACTATGGTTCTGTATTAGTGGAAGCATGTAAGTTGGCACTAATTACTCGTTGGGCTGGCGATCATCATATCAAGTTTTGGAAACAAGGAATTGATAAAGTCCTCCTTAATCTTCTGATTGAAAATATTCATGACCAATCGTCTGAATTTGTCTTGTCATTGGAAAAACAAATATCCATGGTGAAGGAGGGACTGAAAGTCAATTATCATGTTGCTCTAAGGAGTTATGTGTGGGACATTCTCGGGTGGCTAACAATTCACTGTGGAGAAAATTCAAACCCTTATGGTTATACAGAGGAGAGTGAACTCCACATCAACTTACTAATTTTGTGTGCATGCTTCACTTTTGTGGATGTAATTCAAAAATGGTGCCGGATATGTCAAAATGATGTTGATGATAATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTAATGATGATATATTCCCCGTGTAATTATATTTCCTCACATGCTAGATTTGTATTATCTGATATACTGAAGGTCAAAGGGGATCCGTGCTTGAGAAACTCACTACATACCCTAGATTATATATCATCCCTGAAAAGCTATAGTTCATTTGATAAACTTCAACTTGTTATCAACTTAATTGGGTTAACTTGTCTTTCAAGTTTACCACAGTATCAAAGATGTATCATAGAAAGCAGAGGGATAGAGGCTGTTGTTCTTCTTGTGCGACGATGCTTAAGTAATGATATTCATGTAGAAAGGCCTGAAGTTGCTCCTCATTTGCATACTGTATTCCATAAAAGGTCTTGTTGCTGGAGTGGTAAAGGAGACTGGGAAGGTTCCAATGTTCTCTTATTTTATGGTCTGTGGGGCTTAGCTGAATTTCTTCATCAGTGTGGCCTTTTACAAGACAATCCTCAGCAATTTACTAGAGAGGTGACAAACATTAAAACTCAGTTAGTTAACAAACTTCATGAGATATGTAGTAGCACCTCTTTCAGTCCTGGAGTGAAATGGTATGTttcttatattctaagttaTTTTGGATTTTACGGTTTCCCAAATGAATATTCCAAAAGGATTGGGATATCTTTTAATAAGGAAGAATATGCAGATTTGCGACTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCATCAATTCTACCTTCTAAAGTGTTATCTAGTAGTAAGAGTTCTAAACAAATAACAGATAATTTTGTTGGAGAGACCGTGCGAGAAGTTCGCTATTCTTCTCACGTTGATTATGAAgcattgttgttattgttggaaTATGTATATCTGGGGCGCTTGCATGCAGCAGAAGAAGAAACTGTGAAGAAGCTCAAAATTCTTGCTAAACGTTGCAATCTACAGCCTCTCTTGCAAATGCTTTGCAGACAATCTCCAAAGTGGAGCACACCTTTCCCCAGCTTTAATCTTACTTCATCTCTTGATCCAGCTGGAAGTTATTTTTCAGATGTCGTAATGGAAGCTAAATTGAATGAGCTTGTTGGATGGGCATGTAATATCTGTTCTCATCCAGTACCACATTTCCATGCTCACAAAGTCATATTGCAGTCTGGCTGTGATTATTTACAGGGTTTGTTCAGATCAGGAATGCAAGAGAGTCATTCACAAGTCATAAAGGTTGATATTAGCTGGGAAGCATTGATAAAACTGGTACATTGGTTTTATTCTGATGAGCTGCCGAATCCCCCTTCTGGTTGTTTGTGGTTTAACATGGATGATCAAGAAAAGCTATTCAATTTGCAACCATATGTGGAGCTTTGTTGGCTTGGTGAGTTCTGGATTATGGAAAGTATTCAGGAAGCCTGCTGGAATGTGATTATGTCTTGTCTTGACTCTGCTAAGCAGTTGTccattaaaataatcaaaatggCTTATAAGCTCTCTTTGTGGAAGTTGGTTGAAATTGCCGCAAATCTCATGGCTCCTTCATATAGGCAATTACGGGATTCGGGTGAACTTGAAGAATTTGATGATGCACTAGTTCACTTCATTTATTCTGCTTCTATTGAACTTAACCACGAAGATCTAGAATATGAAGTTTTTCAAAGCAGCCCTTACTTTGAGCTGTTAGATTCTGTTACAGTTTTTGTTAGAGTTTTGTCAAAATATGGGTTTGGTAAGACACTTTTGGCTTGCGAGCCTCCGTCAGCAATAGCAGTTGTTGTGGCTTCTGATTGCAGTGAAATTGTGGCCCCAAAGCGCTATCTCGTCCAGCAACTGTTAGATAATATTTCTCAACCACACCCCACAACTTGTTCAACTATGATTTCAGCTTTAACCACTCATGGACTTCCAAATGAGGCTATAAAGATCTATGCTTTGTTGCGGGCACATGGGATCAAACCCCACAAACCTGTGTTTAGGGCTGTTGTCAAGGCTTGTGCTGCTTCTGGTGATGCCTTGAGAGTCAAAGAAGTTCATGATGATGCATTCGGTACGGGTGATATCTGA 3366 0.3779 TLMIRQINGSGSALTLKCRKMYFDQLLLFLILYLLMHVPHVIQLLRNLLLILLGALLWILQCKNEPLLSMASNVAVKLVSVLPSQLLQLRMLDLVYCLSSLLSSHQVEVAIPCATALNSIISNLNATSEKAVIEALKETEISICIVRNIKDCSAKKIEYFVEMASLLSTILLRWSSSRFPVCNDDELMKVLANMHTKKDSSIKLVLLKLYTSLALCDSVAQKLIEDGEVFMQMIVQAMGKSNPHDVRIEGFRLAQCLLRSQENCLKVMDLCGEALVDAIICGMRETGPCSKKIENNYGSVLVEACKLALITRWAGDHHIKFWKQGIDKVLLNLLIENIHDQSSEFVLSLEKQISMVKEGLKVNYHVALRSYVWDILGWLTIHCGENSNPYGYTEESELHINLLILCACFTFVDVIQKWCRICQNDVDDNFQSEPVSRAVLMMIYSPCNYISSHARFVLSDILKVKGDPCLRNSLHTLDYISSLKSYSSFDKLQLVINLIGLTCLSSLPQYQRCIIESRGIEAVVLLVRRCLSNDIHVERPEVAPHLHTVFHKRSCCWSGKGDWEGSNVLLFYGLWGLAEFLHQCGLLQDNPQQFTREVTNIKTQLVNKLHEICSSTSFSPGVKWYVSYILSYFGFYGFPNEYSKRIGISFNKEEYADLRLIVANGDSVSVHGVILAVRCPSILPSKVLSSSKSSKQITDNFVGETVREVRYSSHVDYEALLLLLEYVYLGRLHAAEEETVKKLKILAKRCNLQPLLQMLCRQSPKWSTPFPSFNLTSSLDPAGSYFSDVVMEAKLNELVGWACNICSHPVPHFHAHKVILQSGCDYLQGLFRSGMQESHSQVIKVDISWEALIKLVHWFYSDELPNPPSGCLWFNMDDQEKLFNLQPYVELCWLGEFWIMESIQEACWNVIMSCLDSAKQLSIKIIKMAYKLSLWKLVEIAANLMAPSYRQLRDSGELEEFDDALVHFIYSASIELNHEDLEYEVFQSSPYFELLDSVTVFVRVLSKYGFGKTLLACEPPSAIAVVVASDCSEIVAPKRYLVQQLLDNISQPHPTTCSTMISALTTHGLPNEAIKIYALLRAHGIKPHKPVFRAVVKACAASGDALRVKEVHDDAFGTGDI 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03941 1121 PANTHER OS06G0674800 PROTEIN 49 979 IPR044953 -
Tsu02g03941 1121 Gene3D Potassium Channel Kv1.1; Chain A 639 763 IPR011333 -
Tsu02g03941 1121 Pfam BTB/POZ domain 650 758 IPR000210 GO:0005515
Tsu02g03941 1121 Pfam BTB/POZ domain 812 867 IPR000210 GO:0005515
Tsu02g03941 1121 SUPERFAMILY POZ domain 634 760 IPR011333 -
Tsu02g03941 1121 SUPERFAMILY POZ domain 812 912 IPR011333 -
Tsu02g03941 1121 Gene3D Tetratricopeptide repeat domain 1038 1118 IPR011990 GO:0005515
Tsu02g03941 1121 ProSiteProfiles BTB domain profile. 787 868 IPR000210 GO:0005515
Tsu02g03941 1121 TIGRFAM PPR: pentatricopeptide repeat domain 1056 1087 IPR002885 -
Tsu02g03941 1121 SMART BTB_4 800 915 IPR000210 GO:0005515
Tsu02g03941 1121 SMART BTB_4 656 767 IPR000210 GO:0005515
Tsu02g03941 1121 CDD BTB_POZ_ZBTB_KLHL-like 812 864 - -
Tsu02g03941 1121 Gene3D Potassium Channel Kv1.1; Chain A 783 955 IPR011333 -
Tsu02g03941 1121 SUPERFAMILY ARM repeat 47 640 IPR016024 -
Tsu02g03941 1121 ProSiteProfiles BTB domain profile. 656 736 IPR000210 GO:0005515
Tsu02g03941 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1053 1087 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03941 Tsu-Chr2 45716578 45723770 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu02g03941 BTB 6.5e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03941 - - gsj:114385670 1433.7