Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03887 ATGAAGTTTTCTGTCTCACCTGTTGTGCGTGTTGCTGTTCAGTGCAAGGTTGCTTCAGATCTTCCTAAGCTTGTTGAAGGTCTCAAACGTCTTGCTAAGTCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGAACACATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAGGATTTGCAGGATGATTTCATGGGTGGAGCTGAAATTATCAAATCTGACCCTGTTGTGTCATTCAGAGAAACTGTTCTTGAGAGATCATGCCGCACAGTGATGAGTAAATCACCAAACAAGCACAACAGGTTGTACATGGAAGCAAGACCATTAGAAGATGGGCTTGCAGAAGCCATTGATGAAGGCACGATTGGACCAAGGGATGACCCTAAGAACCGTTCCAAAATCCTGTCAGAAACGTATGGTTGGGATAAGGATCTTGCCAAGAAAATCTGGTGTTTTGGACCTGAGACCACCGGTCCCAACATGGTGGTTGATATGTGTAAGGGAGTCCAATACTTGAATGAAATCAAGGATTCTGTTGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGCTTTGTCTGAAGAAAACATGAGAGGCATATGCTTCGAAGTATGTGATGTTGTCCTCCACACAGATGCTATCCACAGAGGAGGTGGTCAGATCATTCCTACTGCCAGGAGAGTCTTCTATGCCTCACAGCTGACAGCCAAACCCAGGCTTCTTGAGCCTGTTTACATGGTGGAAATCCAAGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAATCAGAAACGTGGACATGTCTTTGAAGAAATGCAGAGGCCTGGTACTCCACTTTACAACATCAAAGCATACTTACCTGTCATTGAGTCCTTTGGATTCTCCAGTCAATTGAGGGCTGCAACATCAGGACAGGCTTTCCCTCAGTGTGTGTTTGATCATTGGGACATGATGTCATCAGACCCATTGGAGGCTGGCTCACAAGCTGCAACACTTGTTACCGATATTCGCAAGAGGAAGGGATTGAAGGAGCAGATGACTCCACTGTCTGAGTTTGAAGATAAGCTTTAG 1092 0.4533 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDEGTIGPRDDPKNRSKILSETYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALSEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAATLVTDIRKRKGLKEQMTPLSEFEDKL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03887 363 SUPERFAMILY Ribosomal protein S5 domain 2-like 82 246 IPR020568 -
Tsu02g03887 363 SUPERFAMILY EF-G C-terminal domain-like 247 358 IPR035647 -
Tsu02g03887 363 Pfam Elongation Factor G, domain III 7 69 IPR041095 -
Tsu02g03887 363 Pfam Elongation factor G C-terminus 244 331 IPR000640 -
Tsu02g03887 363 PANTHER - 1 362 - -
Tsu02g03887 363 Pfam Elongation factor G, domain IV 131 242 IPR005517 GO:0005525
Tsu02g03887 363 Gene3D - 243 363 - -
Tsu02g03887 363 Gene3D Elongation Factor G (Translational Gtpase), domain 3 6 83 - -
Tsu02g03887 363 SMART EFG_IV_2 125 242 IPR005517 GO:0005525
Tsu02g03887 363 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 362 - -
Tsu02g03887 363 CDD eEF2_snRNP_like_C 247 325 - -
Tsu02g03887 363 SMART EFG_C_a 244 333 IPR000640 -
Tsu02g03887 363 CDD EF2_snRNP_III 7 79 - -
Tsu02g03887 363 SUPERFAMILY EF-G C-terminal domain-like 4 80 IPR035647 -
Tsu02g03887 363 CDD aeEF2_snRNP_like_IV 79 250 - -
Tsu02g03887 363 Gene3D - 90 242 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03887 Tsu-Chr2 44856946 44858037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03887 1 363 Eukaryotic Initiation Factors Gene Family AT1G56070 92.287 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03887 K03234 - tcc:18594569 707.597