Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03885 ATGGTGAAGTTCACAGCTGATGAGTTGCGTCGTATTATGGACTACAAGCACAACATTCGTAATATGTCTGTCATTGCTCATGTTGATCACGGAAAATCAACTTTGACGGATTCCCTTGTTGCTGCTGCTGGAATTATAGCACAAGAGGTTGCTGGAGATGTTCGGATGACAGATACCCGGGCTGATGAAGCTGAGCGTGGTATCACTATCAAGTCTACTGGTATCTCACTATACTACGAGATGTCTGATGAGTCTCTCAAGAGTTACAAGGGAGAGCGTAATGGGAATGAGTATCTCATTAATCTCATTGATTCCCCTGGGCACGTCGACTTTTCATCTGAGGTTACTGCAGCACTTCGTATTACTGATGGAGCACTAGTGGTGGTGGATTGTGTTGAGGGTGTTTGTGTGCAAACCGAAACTGTCTTGCGACAAGCCCTTGGAGAAAGGATCAGGCCTGTTCTTACAGTTAATAAGATGGACAGATGCTTTCTTGAGCTCCAGGTTGATGGAGAGGAAGCTTATCAGACCTTCCAGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAAGATCCATTGCTCGGTGATGTTCAAGTTTATCCTGAGAAGGGAACTGTTGCTTTCTCTGCTGGTCTGCATGGTTGGGCCTTTACTTTGACCAACTTTGCAAAGATGTATGCCTCCAAATTTGGTGTTGACGAGTCAAAGATGATGGAGAGGCTCTGGGGTGAAAATTTCTTTGATCCTGCCACTAAGAAATGGACCACCAAGAACACCGGTTCAGCTACATGCAAGCGTGGGTTTGTTCAATTTTGTTATGAGCCTATCAAGCAAGGTCATTAA 852 0.4448 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDESLKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQGH 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03885 283 TIGRFAM small_GTP: small GTP-binding protein domain 19 177 IPR005225 GO:0005525
Tsu02g03885 283 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Tsu02g03885 283 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Tsu02g03885 283 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Tsu02g03885 283 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Tsu02g03885 283 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Tsu02g03885 283 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 281 - -
Tsu02g03885 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 280 IPR027417 -
Tsu02g03885 283 Pfam Elongation factor Tu GTP binding domain 17 221 IPR000795 GO:0003924|GO:0005525
Tsu02g03885 283 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 253 IPR000795 GO:0003924|GO:0005525
Tsu02g03885 283 PANTHER OS01G0742200 PROTEIN 1 281 - -
Tsu02g03885 283 Gene3D - 3 237 IPR027417 -
Tsu02g03885 283 CDD EF2 20 230 - -
Tsu02g03885 283 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03885 Tsu-Chr2 44854909 44856355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03885 1 281 Eukaryotic Initiation Factors Gene Family AT1G56070 95.730 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03885 K03234 - qsu:112038254 558.14