LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g03863	ATGGCTGGATTGTTGCTTGGTGATGTCTCTAATCAAGGAGCACATCCAGTTGGTTCTCAAAGATGGTATTTTTCTAGGAAGGAGATTGAAGAAAATTCACCATCCCGAGCAGATGGCATAAATTTGAAGAAAGAAACTTACCTACGCAAATCATACTGTACGTTTCTGCAAGAATTAGGCAAGGAACTTAAAGTACCTCAAGTAACTATTGCAACAGCAATAGTCTTTTGTCATAGATTCTTTCTTCGGCAGTCCCATGCAAAGAATGACAGGAGGACCATTGCAACAGTGTGCATGTTTCTTGCTGGCAAAGTTGAAGAAACTCCCCGCCCATTGAAAGATGTAATCCTTgtttcatatgaaattataaataagaAGGATCCAACAGCAGTTCAGAGAATCAAACAGAAGGAAGTGTACGTACATCAGAAGGAAATAATTCTACTTGCAGAGAGGCTTGTTCTTGCAACTCTTGGTTTTGATCTTAGTGTGCACCATCCTTATAAACCTCTTGTTGAGgcaatgaaaaaatttaaagttgcTCAAAATGAACTTGCTCAAGCTGCTTGGAATTTCGTAAATGATGGACTTCGGACATCTCTTTGGTTGCAATTTAAGCCCCATCACATTGCAGCTGGAGCCATATTTGTGGCTGCCAGGCTTCTAAAAGTGAAGCTCCCATCAAGTGGGGAGAAGGTCTGGTGGCAAGAGTTTGATGTCACCCCACACCAATTGGAGGAAGTGAGTATCCAAATTCTCGAGCTTTATGAACAAAAGCGAATGCCGCAATCCAATGATGCTGAAGGAGCTACAGTTGGTGGGAATTCCAATTGGACCACTGTAAAAGCTCCAAATAGTAACAATGAAACTGCAGCCGCAAACAGTAATTCCCAGACTGGAGGCACTAGTTCGAGACCTGAAACATCCAAGACTGCATCTTCTACGACCACACTTGATTCATCTGTTGCTTACCGTGTTGGGCGCTCCATCTCTAATCCTGGTAGGAGTAGTGATCATGGGCCCAAAGAAATGAAACGAAGTGTGGAAGATGATGTCAAAATTACTCAACATTCTGAGGAGCAAAACTCACTAGCACTGCAAGGACTAGATGTGGTGAGATCTCAGTGTGATAATGGTGAAAAAGAGCATGAAAGCAATACTCTTAGAACTGAAACTAAAGAACACGCTGAATCGAAAGATAAGCATTACAGTAGAAACCTAGATGATAAGGACGGTAGTATACTTAGCTGGCCTCCTCGAGAAGCCATTACAAATTTTGATACAGACAAGTACAAAGCTGCAATACAAAAACGAAGGAAAGTAGCTGGTCATATAACCAAAAAAACAGATTTCATGGATGACGATGATCTCATCGAGAGGGAACTGGAAGATATAGAATATGCTCCTCCTCAGAGTGAGAAGAGTAAGCAAGATAGAAGGCAAAGCTGGTCTAAGCTCTCAGATAGATCAGATTATGAAAACAGTCATGGGAGACATCAAGATCATGCAGATGAGCAACCTCATGGGGTAAAGGGTCTGCCATCACTCCAAGATCATGCTGTGGAAGAAGGTGAGGTGTCAGCTTTTGACGACGTTAGTGTAGGCCTTCCGTCACCCAAGTCAAGCAACCGCAGGAGGAAAGCAGGGAGCTCACCTGATAGAGTGGTGGAGGGGAAGCAGAGACATAATTATGGCCCTGGGTCTCAACACAATAATCATTGTGATTATGTTGAAGATCGGAGCATGGTTAGCAGGCTAGCAAAACCTCTCTCTATTTCTCACGCACACTGTCGCGCCACAACTTCTTCCCTGATTTTTGGTTTCGACTTCCCACTGCTCGCCGAGAAACTTCGTGTCGCTCTCATCGAATTCTTCTCCGACACTGAAATTCAACTTCAGGATGGATCAAGAGGATGGCACATGGTATTTTACAAGGAGGGAGATTGA	1947	0.4258	MAGLLLGDVSNQGAHPVGSQRWYFSRKEIEENSPSRADGINLKKETYLRKSYCTFLQELGKELKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIINKKDPTAVQRIKQKEVYVHQKEIILLAERLVLATLGFDLSVHHPYKPLVEAMKKFKVAQNELAQAAWNFVNDGLRTSLWLQFKPHHIAAGAIFVAARLLKVKLPSSGEKVWWQEFDVTPHQLEEVSIQILELYEQKRMPQSNDAEGATVGGNSNWTTVKAPNSNNETAAANSNSQTGGTSSRPETSKTASSTTTLDSSVAYRVGRSISNPGRSSDHGPKEMKRSVEDDVKITQHSEEQNSLALQGLDVVRSQCDNGEKEHESNTLRTETKEHAESKDKHYSRNLDDKDGSILSWPPREAITNFDTDKYKAAIQKRRKVAGHITKKTDFMDDDDLIERELEDIEYAPPQSEKSKQDRRQSWSKLSDRSDYENSHGRHQDHADEQPHGVKGLPSLQDHAVEEGEVSAFDDVSVGLPSPKSSNRRRKAGSSPDRVVEGKQRHNYGPGSQHNNHCDYVEDRSMVSRLAKPLSISHAHCRATTSSLIFGFDFPLLAEKLRVALIEFFSDTEIQLQDGSRGWHMVFYKEGD	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g03863	648	MobiDBLite	consensus disorder prediction	264	336	-	-
	Tsu02g03863	648	MobiDBLite	consensus disorder prediction	376	418	-	-
	Tsu02g03863	648	MobiDBLite	consensus disorder prediction	264	348	-	-
	Tsu02g03863	648	SUPERFAMILY	Cyclin-like	165	261	IPR036915	-
	Tsu02g03863	648	MobiDBLite	consensus disorder prediction	465	508	-	-
	Tsu02g03863	648	CDD	CYCLIN	166	256	IPR013763	-
	Tsu02g03863	648	MobiDBLite	consensus disorder prediction	546	560	-	-
	Tsu02g03863	648	CDD	CYCLIN	48	119	IPR013763	-
	Tsu02g03863	648	SMART	cyclin_7	169	254	IPR013763	-
	Tsu02g03863	648	SMART	cyclin_7	54	156	IPR013763	-
	Tsu02g03863	648	Gene3D	-	15	162	-	-
	Tsu02g03863	648	Pfam	Cyclin, N-terminal domain	23	163	IPR006671	-
	Tsu02g03863	648	Gene3D	-	164	269	-	-
	Tsu02g03863	648	MobiDBLite	consensus disorder prediction	527	572	-	-
	Tsu02g03863	648	MobiDBLite	consensus disorder prediction	376	409	-	-
	Tsu02g03863	648	MobiDBLite	consensus disorder prediction	465	514	-	-
	Tsu02g03863	648	PANTHER	-	19	508	-	-
	Tsu02g03863	648	PANTHER	CYCLIN	19	508	IPR043198	GO:0006357\|GO:0016538
	Tsu02g03863	648	SUPERFAMILY	Cyclin-like	20	164	IPR036915	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g03863	Tsu-Chr2	44591058	44597298	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g03863	44	224	Core Cell Cycle Gene Families	AT5G27620	27.749	4.66e-07	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g03863	K15188		-	gmx:100802312	800.431