LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g03862	ATGGATGTGGTTCCGTTAAGTGGTTCTGGAAAGTGTAACAACAGACGTTGTTCTACGGATTACAATGTCGTCTTTTGTCCTACCTCCAATAATGTCAGATTAGGATTATTGGAACAAGGTGGAATTGTGAGTGTTGGTGAGTCACTTACTGCTGGCAGTGAGACAACCTCATGGCTCTCTTCTTCGGGAGATTTTGCATTTGGATTTTACCAACTTCCTAATGAACTTTTCCTACTAGCTATATGGTATGCCAATATACAAAATGATGCCATCATTTGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGATCAACATTGGTATTAAATAATGCTACTGGGTTGGTTCTCACCAACCCCCAAGGTCTAGAGCTATGGAGATCAGATTTCACATCAGGTACAATTTCTACTGGTATAATGAATGATAATGGAAACTTTCAATTGCGCGACAAAGATTCATTTGCAATCTGGGACAGTTTCAGTCATCCAACTGACACATTACTTCCTAATCAAGTAATTGAATTAAATGGAAGTCTTTCTTCGCGACAAGGAGCATTTAACTTCTCACGCGGAAGATTCAAACTTCACCTACAAGAGGATGGAAATCTTGTGCTCAACCTTATAAATTTGCCAAGTAACTATAGCTATGATCCTTACTATAGTTCTGACACCAATAGTGATGATAAGAATCAATCATATGTTGGCCAACGTTTGATATTTGACGAATCAAGTTTCTTATACATCGAGAGAAAAGGAGGGGATAATTCTTCTATTATCAGCAGCCCAAATGGGGCATTCTCAACTAATGATTTCTACTACAAAGCAACAATGAATTATGACGGAGTTTTCAGTATAGCAACTTACCCTAAAGATCAAACAAGAGGACAAAGTTGGGTCATTCAAAAGACCATACCAGAAAACATATGCTTGTATTCTTCATTTCAAGATGAAGGTGTATGTGGATTTAATAGCATTTGCACCCTTACAAATGATCAAAGGCCGAATTGTACATGTCCGGATGAATATTCCCTAATTGATTCAAATAACAAGTATGCTGGTTGCataccaaattttcaagttatTTGTCAAGCAGGTGGGAATTGGGGTTCAAAAGACGATCTATATACAATGAAGGAATTGCCAAATATAGATTGGCCTCAATCTGATTACGAAAAAATAAGCCCGTCTAGTTTACAAGAATGGATAATGTTTTTGAGGTTTCGTTACAACCACAAAAAGATCAAAAGTAGTAGAAACAACCGAAGTAATTTTGTTAACAATAACTTGCGCAGTTTTAGCTTTAAGGAAATCATCGAAGCAACAAGTAACTTTAGAGAAGAGTTAGGAAGAGGATCTTGTAGCATTGTGTACAAGGGAACAATAGAGATGATAATGAATGTGGCAGTTAAGAAACTAGATAAGTTGATCCAAGATAGTGATAAGGAGTTTCAAACTGAAATGAGTGTGATAGGACAAACTCATCATATAAATCTCGTTCGACTTATTGGTTATTGCAATGAAGGACAACATCGGATTTTGGTATATGAGTTAATGAGTAATGGAACTTTAGCAAACTTTCTTTTCGCCCCTTTAAAGCCAAATTGGAACCAAAGAGTCCACATTGCTCTTGGGATTGCAAGAGGTCTTGTTTATTTACATGAGGGATGTTGCACTCAAAACATCCATTGTGATATAAAACCCCAAAATATTCTTCTTGATGATCAATACAATGCTAGAATTTCAGATTTTGGATTAGCAAAGCTATTGTTGATTAATCAAAGTCACACTGAAACTGGAATTAGAGGAACCAAAGGGTATGTTGCACCAGACTGGTTTAGGAGTTCTCCAATAAATGCAAAGGTTGACACTTATAGTTTTGGTGTATTGTTGTTAGAGATTATTTGTTGTAGGAAAAATGTAGAAAAAGAATTTTTCACTGAAGAAAAGGGGATTTTAACTGATTGGGCTTATGATTGCTATAAGAATAAAAGACTTGACATTCTTCTAGAAAGTGATAATGAGGTTGGCAGTGTCATGATGAGTTTGGAAAAGTTAGTCATGATTGTTATATGGTGCATTCAAGAAGATCCTTCTTTTAGGCCAACAATGAAGGAGGTCTTACTGATGTTAGAAGGAAATGTTGAAGTTGTGGTTCCCCCAAGCCCCTATCTTTATGGTTCTGTGACATTGTAA	2193	0.363	MDVVPLSGSGKCNNRRCSTDYNVVFCPTSNNVRLGLLEQGGIVSVGESLTAGSETTSWLSSSGDFAFGFYQLPNELFLLAIWYANIQNDAIIWYANGDNPAPKGSTLVLNNATGLVLTNPQGLELWRSDFTSGTISTGIMNDNGNFQLRDKDSFAIWDSFSHPTDTLLPNQVIELNGSLSSRQGAFNFSRGRFKLHLQEDGNLVLNLINLPSNYSYDPYYSSDTNSDDKNQSYVGQRLIFDESSFLYIERKGGDNSSIISSPNGAFSTNDFYYKATMNYDGVFSIATYPKDQTRGQSWVIQKTIPENICLYSSFQDEGVCGFNSICTLTNDQRPNCTCPDEYSLIDSNNKYAGCIPNFQVICQAGGNWGSKDDLYTMKELPNIDWPQSDYEKISPSSLQEWIMFLRFRYNHKKIKSSRNNRSNFVNNNLRSFSFKEIIEATSNFREELGRGSCSIVYKGTIEMIMNVAVKKLDKLIQDSDKEFQTEMSVIGQTHHINLVRLIGYCNEGQHRILVYELMSNGTLANFLFAPLKPNWNQRVHIALGIARGLVYLHEGCCTQNIHCDIKPQNILLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSSPINAKVDTYSFGVLLLEIICCRKNVEKEFFTEEKGILTDWAYDCYKNKRLDILLESDNEVGSVMMSLEKLVMIVIWCIQEDPSFRPTMKEVLLMLEGNVEVVVPPSPYLYGSVTL	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g03862	730	PIRSF	SRK	34	401	IPR024171	GO:0004674
	Tsu02g03862	730	PIRSF	SRK	397	729	IPR024171	GO:0004674
	Tsu02g03862	730	Gene3D	Phosphorylase Kinase; domain 1	407	517	-	-
	Tsu02g03862	730	SMART	serkin_6	442	710	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g03862	730	Gene3D	-	163	318	-	-
	Tsu02g03862	730	SUPERFAMILY	Protein kinase-like (PK-like)	421	711	IPR011009	-
	Tsu02g03862	730	ProSiteProfiles	Protein kinase domain profile.	442	724	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g03862	730	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	403	729	-	-
	Tsu02g03862	730	CDD	B_lectin	42	163	IPR001480	-
	Tsu02g03862	730	ProSiteProfiles	Bulb-type lectin domain profile.	40	161	IPR001480	-
	Tsu02g03862	730	PANTHER	MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN	403	729	-	-
	Tsu02g03862	730	PANTHER	MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN	17	400	-	-
	Tsu02g03862	730	Pfam	D-mannose binding lectin	91	177	IPR001480	-
	Tsu02g03862	730	SMART	blect_4	40	163	IPR001480	-
	Tsu02g03862	730	Gene3D	-	38	162	IPR036426	-
	Tsu02g03862	730	SUPERFAMILY	alpha-D-mannose-specific plant lectins	77	224	IPR036426	-
	Tsu02g03862	730	Gene3D	Transferase(Phosphotransferase) domain 1	518	717	-	-
	Tsu02g03862	730	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	17	400	-	-
	Tsu02g03862	730	Pfam	Protein kinase domain	445	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g03862	Tsu-Chr2	44580891	44585755	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g03862	401	715	Receptor kinase-like Gene Family	AT5G45780	39.875	1.48e-66	228

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Tsu02g03862		Pkinase	3e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g03862	-		-	gsj:114387079	928.317