Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03860 ATGGTTGAGCCAATTTCACTATTGTTCTTCTTCACACTTCACCTATCAGTGGTAACATCAGCAAAATTTACTATAGTTAACCAATGCAATCATACGGTGTGGCCAGCTTCATATACTACCAGTGGAACTGCGACAATTGCAACAACCGGATTCATTTTAAAACCCGGTGAGAATTCAACAATCACGGTACCGGCCAAATGGACCGGCCGTTTCTGGGGCCGGACACTCTGCACAACAGATTCCATTTCCGGGAACTTCTCCTGCGTCACAGGCGATTGTGGATCTGGCAAGTTAGCATGTGCTGGCCGGAGTGGATCAGCGCCTGTGACGCTGGCAGAATTCACTTTGAATGGTGCCAATGATCAAGATTTTTATGATGTCAGCTTAGTAGACGGTTATAATGTCCCGATGGATGTGATTCCGTTAGATGGTTCAGGAAAGTGTAACAGTACTGGTTGTCCTACGGATTTGAACGCGGTGTGTCCAACGGAGTTGAAGGTAACGGAAAATGGGACAGTTGTGGCCTGTCAAGGTCCTTGTGCTGCATTTAATTTGCagtttttttgttgtgttgGGAATCATTCAACTCCGGAAACTTGTGAGCCGAGTGTGTATGCTCAGATATTCAAGACGTCGTGTCCTCAAGCTTATAGCTATGCGTATGACGATCAAAGCAGTACATTCACTTGTCCGTCTACCGATTACCAAGTCGTCTTTTGTCCTGCCTCCAAAAACGCCAGCTTAGAATCATTGGATAATCAAGGTGGGAGTGTAAGTGTTGGTGAGTCACTTATAGCAGGTAGTAGGCCAACTCAATGGATCTCTCCTTCAGGAGATTTTGCATTTGGGTTTTATAAACTTCCAAATGAGCTTTTCTTATTAGCTATATGGTATGTCAACATACAAACTGATGCCATCATTTGGTATGCAAATGGAGACAACCCTGCTCCAAAGGGATCAAGATTAGTATTAAATGATTCTCATGGCTTAGTGCTCACTAACCCTCAAGGTTTAGAGCTATGGAGATCAAATTTCACATCAGGTACAATTTCTACTGGTATAATGAATGATGCCGGAAACTTTCAGTTGCGAGATGAAAATTCAGTGGCAATTTGGGATAGTTTCAGTTATCCTACTGACACATTACTTCCTACTCAAGTAATGGAATTAAATGGAAGTCTTTCTTCGCGAGAAGGAGCATTCAATTTCTCGCGTGGAAGGTTCAAACTTCACTTACAAGGGGATGGAAATCTTGTGCTCAACCTTATAAATTTGCCAAGTAACTATAGTTATGATCCTTACTATAGTTCTGACATCAATAGTGATGATAAGAATCAATCAAATGTTGGCCAGCGTTTGATATTTGACAAATCAGGTTTCTTATACATCGAGAGAAAAGGAGGGGGGAATTTTTCTATCAGCAACTCAAATGCGTCATTCTCAACTAATGATTACTACTGCAAAGCAACAATTAATTATGACGGAGTTTTCACTGTATCATTTTACCCTAAAGATCCAAAAAGAGGACAAAGTTGGGTCGTTGCAAAGAGTTTACCCGAAAACATTTGCTTGTATTCTACATTCACAGATGGTGAAGGGGTGTGTGGGTATAATAGCATTTGCACTCTTACAAATGACCAAAGGCCAAATTGTACATGCCCCGATGGATATTCTCCAATTGATTCGAATAATATGTATGCTGGTTGCATACCGAATTTTCAAGTCATTTGTCAAGCTGGTGGGAATTGGGGTTCACAAGATGATCTATATACAATGAAGGAATTACCAAATACCGATTGGCCTAAATCGGATTATGAAATAATAAGTCCGTCTAGTTTAGAAGAATGTAAGGAATCATGTTTGCAAGATTGCTTATGTGTTTTGGTTTCTTTCAATCAAAGTTCTTGCTGGAAGAAGAAGCTCCCGCTATCTTATGGAAGAAGTGATCAGGTAGTAAAAGGAATTTCTATCATGAAATTGATGAAAAATGATCCTTTGTCTGCTTTgacaaatgagaaaaatgatCATGATACTTTGATCATTGTAATTTCAGTTCTTTTGGGAAGCTCTGTGTTTGTTATTTTGACATTGCTTGGGGTAATGTTTTTCGGGTTTCCTTACAACCGCAAGAAGATCAAACATCGTAGAACCAACAAAAATGTTGTTGACAATAACTTGCGCAATTTTACCTTCAAGGAAATAGTTGAAGCAACAAGTAACTTTAGAGAAGAATTAGGAAGAGGATCTTGTAGCGTTGTCTACAAAGGAACAATAGAGATGATGATCAATGTAGCGGTTAAGAAACTAGATAAGTTGCTCCAAGATAGTGATAAGGAATTTCAGACTGAAATGAGTGTGATAGGCCAAACTCATCATAGGAATCTTGTTCGTCTTCTTGGATATTGCAATGAAGGACAACATCGGATTTTGGTATATGAGCTAATGAGTAACGGAACTTTAGCAAAATTTCTTTTCTCCCCTTTAAAACCAAATTGGAACGAACGAGTCAACATTGCACTTGGGATTGCGAGAGGTCTTGTTTACTTGCATGAAGGATGTTGCACTCAAATCATCCATTGTGATATAAAGCCGCAAAATATACTTCTAGATGATCAATACAATGCTAGGATTTCAGATTTTGGACTAGCAAAGCTACTATTGATTAATCAAAGTCACACTGAAACTGGAATTAGAGGAACCAAAGGGTATGTTGCACCAGATTGGTTTAGGAGTGCACCAATCACTACAAAAGTTGATACTTATAGTTTTGGCGTATTGTTGCTAGAGATTATTTGTTGCAGGAAAAATGTAGAGAAAGAATTTATTGCCGAAGAAAAAGGGATTTTAACCGATTGGGCTTATGATTGCTATAAGACTAAAAGACTTGACAATCTTCTTGAAAACGATAATTACGTCGGCAATGACAAGATGAGCTTGGAAAAGTTAGTCATGATTGTTATTTGGTGTATTCAAGAAGATCCTTCTCTTAGGCCAACGATGAAGGAAGTTTTACTAATGTTGGAAGGAATTGTAGAAGTTTTTGTTCCCCCAAGTCCTTATCTGTATGGTTCTGTAAGTTGTAATTAA 3087 0.3855 MVEPISLLFFFTLHLSVVTSAKFTIVNQCNHTVWPASYTTSGTATIATTGFILKPGENSTITVPAKWTGRFWGRTLCTTDSISGNFSCVTGDCGSGKLACAGRSGSAPVTLAEFTLNGANDQDFYDVSLVDGYNVPMDVIPLDGSGKCNSTGCPTDLNAVCPTELKVTENGTVVACQGPCAAFNLQFFCCVGNHSTPETCEPSVYAQIFKTSCPQAYSYAYDDQSSTFTCPSTDYQVVFCPASKNASLESLDNQGGSVSVGESLIAGSRPTQWISPSGDFAFGFYKLPNELFLLAIWYVNIQTDAIIWYANGDNPAPKGSRLVLNDSHGLVLTNPQGLELWRSNFTSGTISTGIMNDAGNFQLRDENSVAIWDSFSYPTDTLLPTQVMELNGSLSSREGAFNFSRGRFKLHLQGDGNLVLNLINLPSNYSYDPYYSSDINSDDKNQSNVGQRLIFDKSGFLYIERKGGGNFSISNSNASFSTNDYYCKATINYDGVFTVSFYPKDPKRGQSWVVAKSLPENICLYSTFTDGEGVCGYNSICTLTNDQRPNCTCPDGYSPIDSNNMYAGCIPNFQVICQAGGNWGSQDDLYTMKELPNTDWPKSDYEIISPSSLEECKESCLQDCLCVLVSFNQSSCWKKKLPLSYGRSDQVVKGISIMKLMKNDPLSALTNEKNDHDTLIIVISVLLGSSVFVILTLLGVMFFGFPYNRKKIKHRRTNKNVVDNNLRNFTFKEIVEATSNFREELGRGSCSVVYKGTIEMMINVAVKKLDKLLQDSDKEFQTEMSVIGQTHHRNLVRLLGYCNEGQHRILVYELMSNGTLAKFLFSPLKPNWNERVNIALGIARGLVYLHEGCCTQIIHCDIKPQNILLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITTKVDTYSFGVLLLEIICCRKNVEKEFIAEEKGILTDWAYDCYKTKRLDNLLENDNYVGNDKMSLEKLVMIVIWCIQEDPSLRPTMKEVLLMLEGIVEVFVPPSPYLYGSVSCN 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03860 1028 SUPERFAMILY Protein kinase-like (PK-like) 723 1008 IPR011009 -
Tsu02g03860 1028 Pfam Thaumatin family 27 241 IPR001938 -
Tsu02g03860 1028 Gene3D Phosphorylase Kinase; domain 1 704 814 - -
Tsu02g03860 1028 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 165 1028 - -
Tsu02g03860 1028 CDD B_lectin 275 378 IPR001480 -
Tsu02g03860 1028 SUPERFAMILY Osmotin, thaumatin-like protein 22 241 IPR037176 -
Tsu02g03860 1028 SMART blect_4 255 378 IPR001480 -
Tsu02g03860 1028 Gene3D - 253 377 IPR036426 -
Tsu02g03860 1028 Gene3D Transferase(Phosphotransferase) domain 1 815 1014 - -
Tsu02g03860 1028 Gene3D Thaumatin 21 241 IPR037176 -
Tsu02g03860 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 857 869 IPR008271 GO:0004672|GO:0006468
Tsu02g03860 1028 SMART serkin_6 739 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03860 1028 Pfam Protein kinase domain 742 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03860 1028 Pfam D-mannose binding lectin 306 391 IPR001480 -
Tsu02g03860 1028 CDD TLP-PA 22 240 - -
Tsu02g03860 1028 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 165 1028 - -
Tsu02g03860 1028 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Tsu02g03860 1028 ProSiteProfiles Protein kinase domain profile. 739 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03860 1028 SMART tha2 23 241 IPR001938 -
Tsu02g03860 1028 ProSiteProfiles Bulb-type lectin domain profile. 249 376 IPR001480 -
Tsu02g03860 1028 Gene3D - 379 522 - -
Tsu02g03860 1028 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Tsu02g03860 1028 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Tsu02g03860 1028 PRINTS Pathogenesis-related protein signature 70 81 IPR001938 -
Tsu02g03860 1028 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Tsu02g03860 1028 SUPERFAMILY alpha-D-mannose-specific plant lectins 292 437 IPR036426 -
Tsu02g03860 1028 ProSiteProfiles Thaumatin family profile. 20 241 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03860 Tsu-Chr2 44562791 44567385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03860 671 1012 Receptor kinase-like Gene Family AT5G45780 39.429 6.38e-72 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu02g03860 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03860 - - mtr:MTR_2g067980 1779.61