Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03831 atGGGAAAAGGAAGAGCACCATGCTGTGATAAGAGTCAAGTTAAGAGAGGACCTTGGAGCCCTGCTGAAGATCTTAAGCTTATTGCTTTTGTTCAGAAATTTGGTCATGAAAATTGGAGATCTCTCCCTAAACAAGCagGTCTTCAGCGGTGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTTAGGCCTGATTTAAAGAGAGGAAATTTTACAGTGGAGGAAGAGGATACCATAATAAGGCTACATAAGGCCTTTGGAAACAAATGGTCAAAGATTGCATCATATTTGCCTGGTAGAACTGATAATGAGATCAAGAATGTGTGGAACAcacatttaaagaaaaaacttgttgtGAAAAATTCAGAGTCAACAAGTGGAGATGAATCCAAGTTAGAATCATCAATAACTTCCTCACCTTCTTCATCAGAATCATTTTTATCAAATGAGGTATCAATAAAATATTCTGAAAAACAAGTATCCAACAATGATGAACTtgataatatcatcaatgaCGATCCAAAAGGGTCATCATCAAATTCATTATCACCTTCAATTGagtcaaatattttgaactcaagtcaaattgttgataaaaaattgCTTGAAAAAGAATTGGCTTCTTTAGGAACTTTTGATATTGACAATATATTAGAAGAGATGGAAAATACAAATGATTTAATTGAAATACCATGGGAATCAGATTATGATCTTTGGAATTATATTGATAATATTGGATCTTATAATCAATTAAATGTTGGTGAAGAAAATGTTCAAAATGATGTTGTTGAAGCAAAAAAATTGTCACATGATGAATTTGGAGCATTAGGTGAAAAAAAGGAGTCAAACAAGAAGAATGAGGCCCTACCAAAGAATTATGAAGTTGAGCAAGAAATTAACCCTAATGAGGCATTTGATTTCAATGATATTATAATGTCTGATTCTGAATTAGACTTTTGTAATATTCAATTGTGGCCTTCTTTGCCACAAAATAGTAGTCCTAAAGTCTAA 1014 0.3067 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFVQKFGHENWRSLPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTVEEEDTIIRLHKAFGNKWSKIASYLPGRTDNEIKNVWNTHLKKKLVVKNSESTSGDESKLESSITSSPSSSESFLSNEVSIKYSEKQVSNNDELDNIINDDPKGSSSNSLSPSIESNILNSSQIVDKKLLEKELASLGTFDIDNILEEMENTNDLIEIPWESDYDLWNYIDNIGSYNQLNVGEENVQNDVVEAKKLSHDEFGALGEKKESNKKNEALPKNYEVEQEINPNEAFDFNDIIMSDSELDFCNIQLWPSLPQNSSPKV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03831 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Tsu02g03831 337 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Tsu02g03831 337 PANTHER TRANSCRIPTION FACTOR MYB72 1 283 - -
Tsu02g03831 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 283 - -
Tsu02g03831 337 MobiDBLite consensus disorder prediction 165 185 - -
Tsu02g03831 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Tsu02g03831 337 Gene3D - 70 138 - -
Tsu02g03831 337 MobiDBLite consensus disorder prediction 125 145 - -
Tsu02g03831 337 CDD SANT 71 114 IPR001005 -
Tsu02g03831 337 CDD SANT 18 63 IPR001005 -
Tsu02g03831 337 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Tsu02g03831 337 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Tsu02g03831 337 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Tsu02g03831 337 Gene3D - 16 68 - -
Tsu02g03831 337 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Tsu02g03831 337 SMART sant 68 116 IPR001005 -
Tsu02g03831 337 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03831 Tsu-Chr2 43908304 43912056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03831 1 256 MYB Transcription Factor Family AT1G79180 48.110 3.10e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g03831 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03831 K09422 - gmx:100101836 381.333