Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03821 ATGGGAGCACTTAGCACATACTATAACTATAATTGTTACCCTTGTCAACCTCTTCAAACTAACACCAACTCAGAAATAATCACTTTTCAACATCATGAACAAGAACAACAGTTACTATTACCTGAATTATCACAAATTTCAGAACATAACcaccatttttcatcttcttaTTTAGATGAAACTTTGTTTTTTCAAAGtccttatttttactcaaatGAGACTTACCCTTTTCATGAAGAACTATTTGTTGACTCAACTTTCACTTCTCAAAATGATGGCTTTATTTCAATGAATGAAATTTTCCCAAATGATGAAAATTTCAACACTTACCTTCCATGTGCAAAACGACAAAAGCTATGTTATGAGGAGAAAAAAGTtcaacaacaagaacaagaagagaTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTTTTGTTACCTTTGAAGCAGAACAACCATTTTGTTCTGCTTCGAAAATTGTTGGTTGTGAGAAGAAAGTGAATGAAAAGACTATCTCGTCGCAGAGTATTGCGGcgagagaaagaagaaggaagatAACTGAGAAGACACAACAGCTTGGAAAGTTGGTTCCTGGTGGACCTAAGATGAATACAGCAGAGATGCTTAGTGCTGCTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGGAACATTAAGCAAGGAAGAAAAGGAACCTCCTCCAAATCAAGATATACACAAACTACTTGTTTCACCCTTTGTTCAAGAGAAATTGTATTTGGAAGAAAGGTGCTTTGTTACAAAAGAGTTTGTCACCACACTAACCAATCATGATGATGTTAGATCAAAACCTACCATCCTTAAGGGTCTTAAACAGCTAATTGGAACAGAGAATAATGAGAAAAAACCAAAGCAAGAATAA 936 0.3173 MGALSTYYNYNCYPCQPLQTNTNSEIITFQHHEQEQQLLLPELSQISEHNHHFSSSYLDETLFFQSPYFYSNETYPFHEELFVDSTFTSQNDGFISMNEIFPNDENFNTYLPCAKRQKLCYEEKKVQQQEQEEILNSTNFFVDEFMTNPFVTFEAEQPFCSASKIVGCEKKVNEKTISSQSIAARERRRKITEKTQQLGKLVPGGPKMNTAEMLSAAANYVKFLQAQVGMLQVMGTLSKEEKEPPPNQDIHKLLVSPFVQEKLYLEERCFVTKEFVTTLTNHDDVRSKPTILKGLKQLIGTENNEKKPKQE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03821 311 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 2 296 - -
Tsu02g03821 311 Gene3D - 173 243 IPR036638 GO:0046983
Tsu02g03821 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 233 IPR036638 GO:0046983
Tsu02g03821 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Tsu02g03821 311 SMART finulus 181 230 IPR011598 GO:0046983
Tsu02g03821 311 Pfam Helix-loop-helix DNA-binding domain 181 225 IPR011598 GO:0046983
Tsu02g03821 311 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03821 Tsu-Chr2 43742135 43744639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03821 1 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 36.137 4.55e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g03821 HLH 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03821 - - mtr:MTR_1g060700 421.779