Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03806 ATGTTCTGGGCAAACCAAATGCAAGAGATCGAGCAAACATTTGACTTTAAAAACCATACTCTCCCGCTTGCCCgtataaagaaaataatgaaagcTGACGAAGATGTTCGGATGATTTCGGCAGAAGCTCCAGTCGTATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACTTTGCGATCTTGGATCCACACAGAAGAAAACAAGAGAAGAACACTACAAAAGAATGATGTAGCAGCTGCTATTGCAAGAAATGATGTTTTTGATTTCTTGGTTGATATCATTCCAAGAGATGAATTGAAAGAAGAGGGGCTTGGAATCGCAAAGGCTGCTATTCCAATAATCGGTGCTCCAGCTGATATGCCATATTATTTTGTCCCACCACAGCATCATTTAGGCCCTACAGGAAGATCATGGGAAACTCAGTTGATCAAGCAACACTGTATTCTAACCAGCAGCCTCGACCTCCGATGGCTTTCATGCCCTGGCCAAATGCGCACCCCCAGCAACAGCAACCACCGCAATAACAATAAACAGACTCTTAATGAATATGGCGATTCAATTCAATTAGCGCCAAACCCACCGCCCCACCAATCGATTCAACATATAGCATTTCCTGATGGAAGTAAACCTGCTGAATATCTCATGACCAGTTCTACCAGGGAATCATCAAAATGA 681 0.4156 MFWANQMQEIEQTFDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDVAAAIARNDVFDFLVDIIPRDELKEEGLGIAKAAIPIIGAPADMPYYFVPPQHHLGPTGRSWETQLIKQHCILTSSLDLRWLSCPGQMRTPSNSNHRNNNKQTLNEYGDSIQLAPNPPPHQSIQHIAFPDGSKPAEYLMTSSTRESSK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03806 226 MobiDBLite consensus disorder prediction 186 226 - -
Tsu02g03806 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 83 IPR003958 -
Tsu02g03806 226 SUPERFAMILY Histone-fold 7 92 IPR009072 GO:0046982
Tsu02g03806 226 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 132 - -
Tsu02g03806 226 Gene3D Histone, subunit A 1 98 IPR009072 GO:0046982
Tsu02g03806 226 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 2 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03806 Tsu-Chr2 43433879 43434847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03806 1 130 CCAAT-HAP5 Transcription Factor Family AT1G56170 83.206 1.19e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu02g03806 CBFD_NFYB_HMF 4.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03806 K08066 - zju:107417913 253.832