Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03798 ATGGAGCAACCACAACACTTAGTAGAACAAAACTTCCCACTCTTCAAACCATCACGCAAACCCTCAGCAAACCCTTCATTCCCCACTTCCAATTTTATCAAACCTAACTCCCAAACCCAAACCGCTCAAGACGACGTCGTTACACATGAAAACCCTAACTCCAACCCTGAAAACACCGCCACCACCACATTCTCCGATCTCGGCCTCTCAGAATGGGCGGTCAAGACTTGCAAAGAGCTCGGAATGAAGTTCCCACGCCGCGTCCAGCAGTACTGCATTCCGAAGATTCTAGAAGGTCGTCATGTAATTGGAATTGATGAGACTGGTAGCGGTAAAACGGCGGCGTTTGCACTTCCGATTCTTCAGCGACTAGCTGAGCATCCGTTTGGTGTGTTTGCTCTTGTGGTAACGCCGACTCGCGAGCTTGCGTTTCAGTTGGCGGAGCAGTTTCGTGCTCTTGGTTCATCGGTTCGTCTCCGAACTGCGGTGGTTGTTGGTGGTATGGATATGCTTACACAGACGAAGGAGTTGGTTGCTAGGCCTCATCTTGTTATTGCTACTCCTGGGAGAATTAAGGTTTTGCTTAAGGATAATCCTGAAATTGCTCCTGTTTTTGCTAGAACTAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTCTTGGACGTTGGGTTTCAGGAggaattgaaatttatttttcagtGCTTACCAGAAAACCGCCAAAACCTATTCTTTTCTGCAACCACGACTAGTAATCTGCAAAAGTTGCGTGAGCGTTATCAAGATAAGCTGTATGCCTTCGAGGCTTATGAAGGGTTTAAGACAGTTGAAAAGCTCACTCAGCAAGCTATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGTTGCATATCTTGTCTAAAATGAAAGATATGGGCATTCGTTCTGCAATTGTCTTCGTCTCTACTTGCAGAGATTGTCATCGTTTAAATTTGATGTTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCAAGAATTTAAATCTGGAAAGGTTCCTATATTACTAGCAACTGATGTTGCTGGTCGTGGTTTGGATATTCCTACAGTTGATCTTGTTATCAATTATGATGTTCCaagGTTTCCACGAGATTATATCCACCGTGTTGGTCGTACCGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTAGTCACTCAGAATGATGTTGATCTCATTCGTGAAATAGAGGCTCTTATTGAAAGGCAACTTGAAATGATTGAGTACAAAGAAAATGAGGTGCTTTCACTCATGAAAAAGGTTTTCAGTGCCAAGAATGTTGCAAACATGAAAATGATGGATGATGGCTTTGAAGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAGAAAGGATTATTAAAGCAAAGAagtaagagaaaaagaaataaagaattTGCCGAGAAAGGAAATAAACAGGAAAAAGTGGAAGTAGATGCATTATCAAATATAGCAtctccaaaaaaaaagagtaagaaGAGAAAGTAA 1575 0.4114 MEQPQHLVEQNFPLFKPSRKPSANPSFPTSNFIKPNSQTQTAQDDVVTHENPNSNPENTATTTFSDLGLSEWAVKTCKELGMKFPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSVRLRTAVVVGGMDMLTQTKELVARPHLVIATPGRIKVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVEKLTQQAIFIPKKVKDVYLLHILSKMKDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALQEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIERQLEMIEYKENEVLSLMKKVFSAKNVANMKMMDDGFEEKAKERKKQKLKMLEEKGLLKQRSKRKRNKEFAEKGNKQEKVEVDALSNIASPKKKSKKRK 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03798 524 SMART helicmild6 320 401 IPR001650 -
Tsu02g03798 524 MobiDBLite consensus disorder prediction 22 59 - -
Tsu02g03798 524 PANTHER RNA HELICASE 60 492 - -
Tsu02g03798 524 MobiDBLite consensus disorder prediction 474 505 - -
Tsu02g03798 524 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 60 492 - -
Tsu02g03798 524 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724
Tsu02g03798 524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 440 IPR001650 -
Tsu02g03798 524 Coils Coil 418 438 - -
Tsu02g03798 524 CDD SF2_C_DEAD 278 410 - -
Tsu02g03798 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 421 IPR027417 -
Tsu02g03798 524 Pfam DEAD/DEAH box helicase 87 255 IPR011545 GO:0003676|GO:0005524
Tsu02g03798 524 Gene3D - 272 522 IPR027417 -
Tsu02g03798 524 Gene3D - 30 265 IPR027417 -
Tsu02g03798 524 CDD DEADc_DDX49 64 267 - -
Tsu02g03798 524 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 212 220 IPR000629 -
Tsu02g03798 524 Pfam Helicase conserved C-terminal domain 304 401 IPR001650 -
Tsu02g03798 524 MobiDBLite consensus disorder prediction 1 59 - -
Tsu02g03798 524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 266 IPR014001 -
Tsu02g03798 524 MobiDBLite consensus disorder prediction 474 524 - -
Tsu02g03798 524 SMART ultradead3 81 281 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03798 Tsu-Chr2 43277188 43283880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03798 62 430 Eukaryotic Initiation Factors Gene Family AT3G19760 30.295 7.29e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03798 K14778 - gmx:100804060 752.281