Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03751 ATGAGCTGTTCCCACGGAGTTTCGTTGTTGTTTGTCAAAATGGTATGTGGTGAAAAGAGTTCGATTGATACTGTGTATGATGATGTTGCTGACATAGTGCCTGGGAAGGGAGATGTTCACATCAAGGTTAAGGTTATTCGTCTGTGGAAGGTGCCTGCTTTCCTGAATCCGAGTGAATTTAGCTCTGTTGAGATGGTTCTAATGGATggaaagGGGGCAAAAATTCATGCTACTGTTAGGAAGCAATTGTTTTATATGTTTGATTCGAAGGTTGAAGAGGGGAAGGCCTATGAGATGtcttatttttctgttttcccACAGAGTGGTAACTATCGAACCACTCTTCATTCGTACAAACTTGTCTTCCAGGCCAAGACAAGTGTTGTACCTGCTGAGACTTCTGGCTTTGCTCATTCTGGGATTAATGTTACTACTCTTTCTGAGATATGTGCTTTTAATCATGATTACGAGTTCTTGATTGATGTAATTGGTGTTATGACTGGGATATCTGCTAATCGGGAGTATGTACGGAATGACAAGTTAACTAAAATGGTTGTTATTGAGTTGACTGATCATAGTGGCAAGTGTGAATGTGCTTTATTTGGTGACTATGCTGatgattcaacaaaaaaaatggggAAAACTTCTGGTGGTTTGCCTACTGTGGTTATCCAATTTGCCAAAGTCAAGATTTTTAGAGaTAAAGCATCTCTTCAAAATGTTATGGGTACCACCAGGATCCTCATAAATCCAGATATTTCTGAAGTTTTCAAAAATAGCATTGCAGTTCATGGCATAGAGGTTGATGGGGTTGTTCCCATGATTGGTGTACCTGCTAGGACATCTCTTGAGGAAGAGTTCCTTCATGGTGTCTTTGTTGTTTGTGCTGAGATTGTGCGCATTGTTGATGGCCATGATTGGTGGTATCCTGCTTGGAAGTGCCACAAGGCTGTTGTTTTTGACTCTGGATCTTATTTTTGTAGTGGGTGTAGTTGGCATGTGTTTCAAGTTGTCCCTAGATATCTTGTGATTTAG 1035 0.3884 MSCSHGVSLLFVKMVCGEKSSIDTVYDDVADIVPGKGDVHIKVKVIRLWKVPAFLNPSEFSSVEMVLMDGKGAKIHATVRKQLFYMFDSKVEEGKAYEMSYFSVFPQSGNYRTTLHSYKLVFQAKTSVVPAETSGFAHSGINVTTLSEICAFNHDYEFLIDVIGVMTGISANREYVRNDKLTKMVVIELTDHSGKCECALFGDYADDSTKKMGKTSGGLPTVVIQFAKVKIFRDKASLQNVMGTTRILINPDISEVFKNSIAVHGIEVDGVVPMIGVPARTSLEEEFLHGVFVVCAEIVRIVDGHDWWYPAWKCHKAVVFDSGSYFCSGCSWHVFQVVPRYLVI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03751 344 PANTHER REPLICATION FACTOR A 1, RFA1 39 342 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu02g03751 344 SUPERFAMILY Nucleic acid-binding proteins 27 133 IPR012340 -
Tsu02g03751 344 CDD RPA1_DBD_B_like 161 256 - -
Tsu02g03751 344 Gene3D - 137 265 IPR012340 -
Tsu02g03751 344 CDD RPA1_DBD_A_like 41 128 - -
Tsu02g03751 344 Gene3D - 26 130 IPR012340 -
Tsu02g03751 344 Pfam Domain of unknown function DUF223 64 133 IPR003871 -
Tsu02g03751 344 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 39 342 - -
Tsu02g03751 344 Gene3D - 280 344 IPR012340 -
Tsu02g03751 344 SUPERFAMILY Nucleic acid-binding proteins 141 258 IPR012340 -
Tsu02g03751 344 SUPERFAMILY Nucleic acid-binding proteins 291 343 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03751 Tsu-Chr2 42497736 42500239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03751 29 258 Core DNA Replication Machinery Family AT2G06510 24.895 1.44e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03751 - - mtr:MTR_1g075850 335.109